Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30711 | 3' | -51.4 | NC_006552.1 | + | 8097 | 1.15 | 0.001375 |
Target: 5'- gCCACAACGCUACCGGCAAGUCGUACCg -3' miRNA: 3'- -GGUGUUGCGAUGGCCGUUCAGCAUGG- -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 5907 | 0.8 | 0.260948 |
Target: 5'- aCCGCGGCGCUGaCGGCAAGcCGUucagcaaaACCg -3' miRNA: 3'- -GGUGUUGCGAUgGCCGUUCaGCA--------UGG- -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 30971 | 0.78 | 0.343232 |
Target: 5'- aCCACGGCGCUcgACuCGGCuuccGAGUUGUACg -3' miRNA: 3'- -GGUGUUGCGA--UG-GCCG----UUCAGCAUGg -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 26132 | 0.77 | 0.4046 |
Target: 5'- uCCACAAgGCagauuuccuUGCUGGuCGGGUUGUACCa -3' miRNA: 3'- -GGUGUUgCG---------AUGGCC-GUUCAGCAUGG- -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 62159 | 0.75 | 0.492875 |
Target: 5'- aCCAgGGCGa-GCCGaGCGAGUCGUuuACCu -3' miRNA: 3'- -GGUgUUGCgaUGGC-CGUUCAGCA--UGG- -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 25918 | 0.75 | 0.503239 |
Target: 5'- aCAgcCAGCGCUGCCGGCGcAGgaagCGgcagGCCu -3' miRNA: 3'- gGU--GUUGCGAUGGCCGU-UCa---GCa---UGG- -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 22449 | 0.74 | 0.556346 |
Target: 5'- uCCGCGcucgACGCgcagcACCaGCAAGUCGUccACCa -3' miRNA: 3'- -GGUGU----UGCGa----UGGcCGUUCAGCA--UGG- -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 20790 | 0.74 | 0.582428 |
Target: 5'- cCgGCGauuGCGCUGCCGGCcggcgaaaccggcucGAGUaCGUGCUg -3' miRNA: 3'- -GgUGU---UGCGAUGGCCG---------------UUCA-GCAUGG- -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 63140 | 0.73 | 0.610948 |
Target: 5'- gCUugAGCGC-GCCGGC--GUCGUGCg -3' miRNA: 3'- -GGugUUGCGaUGGCCGuuCAGCAUGg -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 51293 | 0.73 | 0.63298 |
Target: 5'- uCCACGGcCGcCUGCUGaGCAucGGUgCGUGCCa -3' miRNA: 3'- -GGUGUU-GC-GAUGGC-CGU--UCA-GCAUGG- -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 34299 | 0.72 | 0.676951 |
Target: 5'- cCCAC--UGCUGCUGGCAgcGGUCGgGCg -3' miRNA: 3'- -GGUGuuGCGAUGGCCGU--UCAGCaUGg -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 13796 | 0.71 | 0.694387 |
Target: 5'- aCGCGACGCUGCCGGacgccaaUACCg -3' miRNA: 3'- gGUGUUGCGAUGGCCguucagcAUGG- -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 21688 | 0.71 | 0.698723 |
Target: 5'- -uGCAGa--UGCCGGCGAuUCGUACCg -3' miRNA: 3'- ggUGUUgcgAUGGCCGUUcAGCAUGG- -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 54350 | 0.71 | 0.70305 |
Target: 5'- gCUGCGGCGCUgccgacucuucggcuGCCGGCuuGUCGaucACCa -3' miRNA: 3'- -GGUGUUGCGA---------------UGGCCGuuCAGCa--UGG- -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 49746 | 0.71 | 0.717029 |
Target: 5'- gUACGGauucCGCUGCCGGCGccagcgauacagccGGUUGUGCg -3' miRNA: 3'- gGUGUU----GCGAUGGCCGU--------------UCAGCAUGg -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 38304 | 0.71 | 0.748706 |
Target: 5'- uCgGCGACGUuguugaUGCCGGCcagcggcaccagggAAGUCGUgGCCa -3' miRNA: 3'- -GgUGUUGCG------AUGGCCG--------------UUCAGCA-UGG- -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 39085 | 0.7 | 0.782304 |
Target: 5'- gCCGUAGCGCUcAUCGuGCAGGUgGUagGCCa -3' miRNA: 3'- -GGUGUUGCGA-UGGC-CGUUCAgCA--UGG- -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 8386 | 0.7 | 0.801865 |
Target: 5'- uCCGCucgAGCGCgcCCGGCGgauGGUUGU-CCg -3' miRNA: 3'- -GGUG---UUGCGauGGCCGU---UCAGCAuGG- -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 545 | 0.69 | 0.828941 |
Target: 5'- uUCGCcGCGCcGCCGGUcagcuucgcgacaGAGUaUGUGCCg -3' miRNA: 3'- -GGUGuUGCGaUGGCCG-------------UUCA-GCAUGG- -5' |
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30711 | 3' | -51.4 | NC_006552.1 | + | 37374 | 0.69 | 0.829844 |
Target: 5'- gCGCAGCuucaaGCUcacgGCUGGCAGGcCGUaGCCg -3' miRNA: 3'- gGUGUUG-----CGA----UGGCCGUUCaGCA-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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