miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30711 3' -51.4 NC_006552.1 + 11611 0.66 0.947517
Target:  5'- uCgAUGugGC-GCCGGCcAGUUcgGUGCCg -3'
miRNA:   3'- -GgUGUugCGaUGGCCGuUCAG--CAUGG- -5'
30711 3' -51.4 NC_006552.1 + 21688 0.71 0.698723
Target:  5'- -uGCAGa--UGCCGGCGAuUCGUACCg -3'
miRNA:   3'- ggUGUUgcgAUGGCCGUUcAGCAUGG- -5'
30711 3' -51.4 NC_006552.1 + 54350 0.71 0.70305
Target:  5'- gCUGCGGCGCUgccgacucuucggcuGCCGGCuuGUCGaucACCa -3'
miRNA:   3'- -GGUGUUGCGA---------------UGGCCGuuCAGCa--UGG- -5'
30711 3' -51.4 NC_006552.1 + 49746 0.71 0.717029
Target:  5'- gUACGGauucCGCUGCCGGCGccagcgauacagccGGUUGUGCg -3'
miRNA:   3'- gGUGUU----GCGAUGGCCGU--------------UCAGCAUGg -5'
30711 3' -51.4 NC_006552.1 + 38304 0.71 0.748706
Target:  5'- uCgGCGACGUuguugaUGCCGGCcagcggcaccagggAAGUCGUgGCCa -3'
miRNA:   3'- -GgUGUUGCG------AUGGCCG--------------UUCAGCA-UGG- -5'
30711 3' -51.4 NC_006552.1 + 39085 0.7 0.782304
Target:  5'- gCCGUAGCGCUcAUCGuGCAGGUgGUagGCCa -3'
miRNA:   3'- -GGUGUUGCGA-UGGC-CGUUCAgCA--UGG- -5'
30711 3' -51.4 NC_006552.1 + 8386 0.7 0.801865
Target:  5'- uCCGCucgAGCGCgcCCGGCGgauGGUUGU-CCg -3'
miRNA:   3'- -GGUG---UUGCGauGGCCGU---UCAGCAuGG- -5'
30711 3' -51.4 NC_006552.1 + 545 0.69 0.828941
Target:  5'- uUCGCcGCGCcGCCGGUcagcuucgcgacaGAGUaUGUGCCg -3'
miRNA:   3'- -GGUGuUGCGaUGGCCG-------------UUCA-GCAUGG- -5'
30711 3' -51.4 NC_006552.1 + 64167 0.69 0.829844
Target:  5'- gUCACGGCGCUGCCgGGCAucaCGcagGCUc -3'
miRNA:   3'- -GGUGUUGCGAUGG-CCGUucaGCa--UGG- -5'
30711 3' -51.4 NC_006552.1 + 13796 0.71 0.694387
Target:  5'- aCGCGACGCUGCCGGacgccaaUACCg -3'
miRNA:   3'- gGUGUUGCGAUGGCCguucagcAUGG- -5'
30711 3' -51.4 NC_006552.1 + 34299 0.72 0.676951
Target:  5'- cCCAC--UGCUGCUGGCAgcGGUCGgGCg -3'
miRNA:   3'- -GGUGuuGCGAUGGCCGU--UCAGCaUGg -5'
30711 3' -51.4 NC_006552.1 + 51293 0.73 0.63298
Target:  5'- uCCACGGcCGcCUGCUGaGCAucGGUgCGUGCCa -3'
miRNA:   3'- -GGUGUU-GC-GAUGGC-CGU--UCA-GCAUGG- -5'
30711 3' -51.4 NC_006552.1 + 5907 0.8 0.260948
Target:  5'- aCCGCGGCGCUGaCGGCAAGcCGUucagcaaaACCg -3'
miRNA:   3'- -GGUGUUGCGAUgGCCGUUCaGCA--------UGG- -5'
30711 3' -51.4 NC_006552.1 + 30971 0.78 0.343232
Target:  5'- aCCACGGCGCUcgACuCGGCuuccGAGUUGUACg -3'
miRNA:   3'- -GGUGUUGCGA--UG-GCCG----UUCAGCAUGg -5'
30711 3' -51.4 NC_006552.1 + 26132 0.77 0.4046
Target:  5'- uCCACAAgGCagauuuccuUGCUGGuCGGGUUGUACCa -3'
miRNA:   3'- -GGUGUUgCG---------AUGGCC-GUUCAGCAUGG- -5'
30711 3' -51.4 NC_006552.1 + 62159 0.75 0.492875
Target:  5'- aCCAgGGCGa-GCCGaGCGAGUCGUuuACCu -3'
miRNA:   3'- -GGUgUUGCgaUGGC-CGUUCAGCA--UGG- -5'
30711 3' -51.4 NC_006552.1 + 25918 0.75 0.503239
Target:  5'- aCAgcCAGCGCUGCCGGCGcAGgaagCGgcagGCCu -3'
miRNA:   3'- gGU--GUUGCGAUGGCCGU-UCa---GCa---UGG- -5'
30711 3' -51.4 NC_006552.1 + 22449 0.74 0.556346
Target:  5'- uCCGCGcucgACGCgcagcACCaGCAAGUCGUccACCa -3'
miRNA:   3'- -GGUGU----UGCGa----UGGcCGUUCAGCA--UGG- -5'
30711 3' -51.4 NC_006552.1 + 20790 0.74 0.582428
Target:  5'- cCgGCGauuGCGCUGCCGGCcggcgaaaccggcucGAGUaCGUGCUg -3'
miRNA:   3'- -GgUGU---UGCGAUGGCCG---------------UUCA-GCAUGG- -5'
30711 3' -51.4 NC_006552.1 + 63140 0.73 0.610948
Target:  5'- gCUugAGCGC-GCCGGC--GUCGUGCg -3'
miRNA:   3'- -GGugUUGCGaUGGCCGuuCAGCAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.