miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30712 3' -54.2 NC_006552.1 + 8592 1.12 0.000943
Target:  5'- cACACCUACAUCGAGCCUUUCGGCGGCg -3'
miRNA:   3'- -UGUGGAUGUAGCUCGGAAAGCCGCCG- -5'
30712 3' -54.2 NC_006552.1 + 51575 0.81 0.139146
Target:  5'- uGCGCCUugucgGCA-CGGGCCUgcUCGGCGGCc -3'
miRNA:   3'- -UGUGGA-----UGUaGCUCGGAa-AGCCGCCG- -5'
30712 3' -54.2 NC_006552.1 + 19866 0.76 0.263915
Target:  5'- uACGCCuUGCAguUCGGGUCUUUCGGgccUGGCa -3'
miRNA:   3'- -UGUGG-AUGU--AGCUCGGAAAGCC---GCCG- -5'
30712 3' -54.2 NC_006552.1 + 3451 0.75 0.330147
Target:  5'- aAguCCUACAUCGAccagcaugccagGCCUguugCGGUGGCg -3'
miRNA:   3'- -UguGGAUGUAGCU------------CGGAaa--GCCGCCG- -5'
30712 3' -54.2 NC_006552.1 + 47548 0.74 0.371928
Target:  5'- gGCGCUgGCgAUCGAGUUcgUUGGCGGCg -3'
miRNA:   3'- -UGUGGaUG-UAGCUCGGaaAGCCGCCG- -5'
30712 3' -54.2 NC_006552.1 + 44637 0.73 0.407852
Target:  5'- cUACCUGCcuggCGAGCaucccCGGCGGCa -3'
miRNA:   3'- uGUGGAUGua--GCUCGgaaa-GCCGCCG- -5'
30712 3' -54.2 NC_006552.1 + 31469 0.72 0.44587
Target:  5'- aACGCCacgACAUCGccaaccGCCagcgCGGCGGCg -3'
miRNA:   3'- -UGUGGa--UGUAGCu-----CGGaaa-GCCGCCG- -5'
30712 3' -54.2 NC_006552.1 + 52822 0.72 0.475643
Target:  5'- cGCGCuuCUGCAaCG-GCCUgcgcgUCGGCGGUg -3'
miRNA:   3'- -UGUG--GAUGUaGCuCGGAa----AGCCGCCG- -5'
30712 3' -54.2 NC_006552.1 + 5526 0.72 0.485786
Target:  5'- uCGCCUGCcUCGccGGCCaa-CGGCGGUg -3'
miRNA:   3'- uGUGGAUGuAGC--UCGGaaaGCCGCCG- -5'
30712 3' -54.2 NC_006552.1 + 1166 0.72 0.485786
Target:  5'- cGCGCCUGCAUCGguagAGCaggcaGGCGGg -3'
miRNA:   3'- -UGUGGAUGUAGC----UCGgaaagCCGCCg -5'
30712 3' -54.2 NC_006552.1 + 63288 0.71 0.53792
Target:  5'- uGCugCUACGaCGuGCUcgaCGGCGGCg -3'
miRNA:   3'- -UGugGAUGUaGCuCGGaaaGCCGCCG- -5'
30712 3' -54.2 NC_006552.1 + 10912 0.71 0.548589
Target:  5'- cCACCUACGgcuUCGcGCCgc-CGGuCGGCa -3'
miRNA:   3'- uGUGGAUGU---AGCuCGGaaaGCC-GCCG- -5'
30712 3' -54.2 NC_006552.1 + 30633 0.7 0.591842
Target:  5'- cACAUCcACGUCcAGCacgUCGGCGGUg -3'
miRNA:   3'- -UGUGGaUGUAGcUCGgaaAGCCGCCG- -5'
30712 3' -54.2 NC_006552.1 + 5450 0.7 0.591842
Target:  5'- cGCugCUACGaacugcUCGAGUa---CGGCGGCc -3'
miRNA:   3'- -UGugGAUGU------AGCUCGgaaaGCCGCCG- -5'
30712 3' -54.2 NC_006552.1 + 29733 0.7 0.60276
Target:  5'- uGCugCUGCGacugcUGAGCgUUUcCGGUGGCg -3'
miRNA:   3'- -UGugGAUGUa----GCUCGgAAA-GCCGCCG- -5'
30712 3' -54.2 NC_006552.1 + 40219 0.69 0.610418
Target:  5'- gACGCCUGCuugaaguUCGucaggcuccuggccAGCCgcucgacagCGGCGGCa -3'
miRNA:   3'- -UGUGGAUGu------AGC--------------UCGGaaa------GCCGCCG- -5'
30712 3' -54.2 NC_006552.1 + 38683 0.69 0.635628
Target:  5'- gGCGCCUGCcaccAGCag--CGGCGGCg -3'
miRNA:   3'- -UGUGGAUGuagcUCGgaaaGCCGCCG- -5'
30712 3' -54.2 NC_006552.1 + 31825 0.69 0.654257
Target:  5'- -gGCCaGCA-CGGGCCggcccuucguagggCGGCGGCg -3'
miRNA:   3'- ugUGGaUGUaGCUCGGaaa-----------GCCGCCG- -5'
30712 3' -54.2 NC_006552.1 + 49850 0.69 0.665191
Target:  5'- -gGCCUGCAgcgccgcaggcugcUCGAGCUUcugUUUGGCcuGGCg -3'
miRNA:   3'- ugUGGAUGU--------------AGCUCGGA---AAGCCG--CCG- -5'
30712 3' -54.2 NC_006552.1 + 20449 0.69 0.668466
Target:  5'- -gGCCUcguucgGC-UCGGGCCgaccgUCGGCGGa -3'
miRNA:   3'- ugUGGA------UGuAGCUCGGaa---AGCCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.