Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30712 | 3' | -54.2 | NC_006552.1 | + | 1166 | 0.72 | 0.485786 |
Target: 5'- cGCGCCUGCAUCGguagAGCaggcaGGCGGg -3' miRNA: 3'- -UGUGGAUGUAGC----UCGgaaagCCGCCg -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 3451 | 0.75 | 0.330147 |
Target: 5'- aAguCCUACAUCGAccagcaugccagGCCUguugCGGUGGCg -3' miRNA: 3'- -UguGGAUGUAGCU------------CGGAaa--GCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 5094 | 0.66 | 0.792808 |
Target: 5'- uAUGCCUGCAUCGAGgggaaccgucccaCCgcgaacccaUGGUGGCg -3' miRNA: 3'- -UGUGGAUGUAGCUC-------------GGaaa------GCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 5141 | 0.66 | 0.822095 |
Target: 5'- -gGgCUGCGcUCGAgGCCUg-CGGCGGUc -3' miRNA: 3'- ugUgGAUGU-AGCU-CGGAaaGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 5450 | 0.7 | 0.591842 |
Target: 5'- cGCugCUACGaacugcUCGAGUa---CGGCGGCc -3' miRNA: 3'- -UGugGAUGU------AGCUCGgaaaGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 5526 | 0.72 | 0.485786 |
Target: 5'- uCGCCUGCcUCGccGGCCaa-CGGCGGUg -3' miRNA: 3'- uGUGGAUGuAGC--UCGGaaaGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 8592 | 1.12 | 0.000943 |
Target: 5'- cACACCUACAUCGAGCCUUUCGGCGGCg -3' miRNA: 3'- -UGUGGAUGUAGCUCGGAAAGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 10912 | 0.71 | 0.548589 |
Target: 5'- cCACCUACGgcuUCGcGCCgc-CGGuCGGCa -3' miRNA: 3'- uGUGGAUGU---AGCuCGGaaaGCC-GCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 11398 | 0.66 | 0.783992 |
Target: 5'- gGCACCgg-GUCGuGCUcUUUGGcCGGCu -3' miRNA: 3'- -UGUGGaugUAGCuCGGaAAGCC-GCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 13209 | 0.67 | 0.73293 |
Target: 5'- cACGCCaGCAgcgaGAGCUUgccgCGGCGcGCc -3' miRNA: 3'- -UGUGGaUGUag--CUCGGAaa--GCCGC-CG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 14782 | 0.66 | 0.8034 |
Target: 5'- cCAUCUGgGUgGgcGGCCUgaUUGGCGGCc -3' miRNA: 3'- uGUGGAUgUAgC--UCGGAa-AGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 15208 | 0.68 | 0.711723 |
Target: 5'- -gGCCUACuacguUCGAGCCga-CGGCacGCg -3' miRNA: 3'- ugUGGAUGu----AGCUCGGaaaGCCGc-CG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 16091 | 0.67 | 0.774048 |
Target: 5'- gGCACCgcugccccACGUC-AGCCg--CGGCGcGCu -3' miRNA: 3'- -UGUGGa-------UGUAGcUCGGaaaGCCGC-CG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 19194 | 0.67 | 0.774048 |
Target: 5'- cGCACCUu--UUGGGCCgggaaGGCGcGCa -3' miRNA: 3'- -UGUGGAuguAGCUCGGaaag-CCGC-CG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 19866 | 0.76 | 0.263915 |
Target: 5'- uACGCCuUGCAguUCGGGUCUUUCGGgccUGGCa -3' miRNA: 3'- -UGUGG-AUGU--AGCUCGGAAAGCC---GCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 20449 | 0.69 | 0.668466 |
Target: 5'- -gGCCUcguucgGC-UCGGGCCgaccgUCGGCGGa -3' miRNA: 3'- ugUGGA------UGuAGCUCGGaa---AGCCGCCg -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 29079 | 0.67 | 0.771036 |
Target: 5'- cCugCUGCGcgccaguguucuguUCGGuguugucuGCCUgaUCGGCGGCa -3' miRNA: 3'- uGugGAUGU--------------AGCU--------CGGAa-AGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 29733 | 0.7 | 0.60276 |
Target: 5'- uGCugCUGCGacugcUGAGCgUUUcCGGUGGCg -3' miRNA: 3'- -UGugGAUGUa----GCUCGgAAA-GCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 30633 | 0.7 | 0.591842 |
Target: 5'- cACAUCcACGUCcAGCacgUCGGCGGUg -3' miRNA: 3'- -UGUGGaUGUAGcUCGgaaAGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 31469 | 0.72 | 0.44587 |
Target: 5'- aACGCCacgACAUCGccaaccGCCagcgCGGCGGCg -3' miRNA: 3'- -UGUGGa--UGUAGCu-----CGGaaa-GCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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