Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30712 | 3' | -54.2 | NC_006552.1 | + | 63288 | 0.71 | 0.53792 |
Target: 5'- uGCugCUACGaCGuGCUcgaCGGCGGCg -3' miRNA: 3'- -UGugGAUGUaGCuCGGaaaGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 63133 | 0.69 | 0.669556 |
Target: 5'- cGCGCCgGCGUCGugcgcGGCCUgcUgaucgaacucgacgcCGGCGGCa -3' miRNA: 3'- -UGUGGaUGUAGC-----UCGGA--Aa--------------GCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 62085 | 0.68 | 0.711723 |
Target: 5'- cCACagUugAUCGAGCCUcagcgcuccgcUUCGuaaGCGGCg -3' miRNA: 3'- uGUGg-AugUAGCUCGGA-----------AAGC---CGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 52822 | 0.72 | 0.475643 |
Target: 5'- cGCGCuuCUGCAaCG-GCCUgcgcgUCGGCGGUg -3' miRNA: 3'- -UGUG--GAUGUaGCuCGGAa----AGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 52318 | 0.68 | 0.690205 |
Target: 5'- uGCGCCU-CggCGA-CC--UCGGCGGCg -3' miRNA: 3'- -UGUGGAuGuaGCUcGGaaAGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 51575 | 0.81 | 0.139146 |
Target: 5'- uGCGCCUugucgGCA-CGGGCCUgcUCGGCGGCc -3' miRNA: 3'- -UGUGGA-----UGUaGCUCGGAa-AGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 50461 | 0.66 | 0.812841 |
Target: 5'- cGCGCCgcggUGC-UCG-GCCUUgaUCuGCGGCa -3' miRNA: 3'- -UGUGG----AUGuAGCuCGGAA--AGcCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 49850 | 0.69 | 0.665191 |
Target: 5'- -gGCCUGCAgcgccgcaggcugcUCGAGCUUcugUUUGGCcuGGCg -3' miRNA: 3'- ugUGGAUGU--------------AGCUCGGA---AAGCCG--CCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 49463 | 0.69 | 0.668466 |
Target: 5'- gACGCgCUGCAUguAGCCggcaucCGGCGGUg -3' miRNA: 3'- -UGUG-GAUGUAgcUCGGaaa---GCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 47548 | 0.74 | 0.371928 |
Target: 5'- gGCGCUgGCgAUCGAGUUcgUUGGCGGCg -3' miRNA: 3'- -UGUGGaUG-UAGCUCGGaaAGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 47212 | 0.66 | 0.79378 |
Target: 5'- -aGCCaacGCGUCcgGGGCCa-UCGGCGGUa -3' miRNA: 3'- ugUGGa--UGUAG--CUCGGaaAGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 44637 | 0.73 | 0.407852 |
Target: 5'- cUACCUGCcuggCGAGCaucccCGGCGGCa -3' miRNA: 3'- uGUGGAUGua--GCUCGgaaa-GCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 40219 | 0.69 | 0.610418 |
Target: 5'- gACGCCUGCuugaaguUCGucaggcuccuggccAGCCgcucgacagCGGCGGCa -3' miRNA: 3'- -UGUGGAUGu------AGC--------------UCGGaaa------GCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 39970 | 0.68 | 0.700997 |
Target: 5'- gGCGCCguugACGUUGAGCUgcgacgCuGUGGCg -3' miRNA: 3'- -UGUGGa---UGUAGCUCGGaaa---GcCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 38683 | 0.69 | 0.635628 |
Target: 5'- gGCGCCUGCcaccAGCag--CGGCGGCg -3' miRNA: 3'- -UGUGGAUGuagcUCGgaaaGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 36466 | 0.67 | 0.763959 |
Target: 5'- -gAUCUGCGggaAGCCggcCGGCGGCg -3' miRNA: 3'- ugUGGAUGUagcUCGGaaaGCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 36017 | 0.66 | 0.809087 |
Target: 5'- aACACCaGCAUUGAGCUgcacgaacuggcgUUC-GUGGCu -3' miRNA: 3'- -UGUGGaUGUAGCUCGGa------------AAGcCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 32832 | 0.67 | 0.743388 |
Target: 5'- cGCGCaCUGCGUCguuGAGCCagUCGGCcacguccuGGUc -3' miRNA: 3'- -UGUG-GAUGUAG---CUCGGaaAGCCG--------CCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 31825 | 0.69 | 0.654257 |
Target: 5'- -gGCCaGCA-CGGGCCggcccuucguagggCGGCGGCg -3' miRNA: 3'- ugUGGaUGUaGCUCGGaaa-----------GCCGCCG- -5' |
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30712 | 3' | -54.2 | NC_006552.1 | + | 31469 | 0.72 | 0.44587 |
Target: 5'- aACGCCacgACAUCGccaaccGCCagcgCGGCGGCg -3' miRNA: 3'- -UGUGGa--UGUAGCu-----CGGaaa-GCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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