Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30713 | 5' | -61.9 | NC_006552.1 | + | 36508 | 0.68 | 0.305411 |
Target: 5'- -cGGCGCCACgCCGCCuGGCaagaucgGCCUgGCa -3' miRNA: 3'- gaUUGCGGUG-GGCGGcUCG-------CGGGgUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 25647 | 0.68 | 0.303975 |
Target: 5'- -cGGCGUCACCCGCC-AGUcugugcgcgugacaGCCUCAUa -3' miRNA: 3'- gaUUGCGGUGGGCGGcUCG--------------CGGGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 20730 | 0.68 | 0.298992 |
Target: 5'- --uGCGCUGCCggCGCCGgcAGaCGCCCCAg -3' miRNA: 3'- gauUGCGGUGG--GCGGC--UC-GCGGGGUg -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 11894 | 0.68 | 0.291984 |
Target: 5'- --cGCGCaGCCCGCCGcGCGgCgCACa -3' miRNA: 3'- gauUGCGgUGGGCGGCuCGCgGgGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 63520 | 0.69 | 0.285105 |
Target: 5'- ---cCGCCGCCaGCaCGAGCGUgUCACa -3' miRNA: 3'- gauuGCGGUGGgCG-GCUCGCGgGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 54877 | 0.69 | 0.285105 |
Target: 5'- gCUGACGaaaGCCCugGCCGAGCcGCCCaugGCg -3' miRNA: 3'- -GAUUGCgg-UGGG--CGGCUCG-CGGGg--UG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 45642 | 0.69 | 0.278354 |
Target: 5'- -gAGCGCCGgCCGCUagcuGAGCgguguacuGCCCCAg -3' miRNA: 3'- gaUUGCGGUgGGCGG----CUCG--------CGGGGUg -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 48361 | 0.69 | 0.271732 |
Target: 5'- -gAACGCCACgaCCGaCCGcGCcCCCCGCc -3' miRNA: 3'- gaUUGCGGUG--GGC-GGCuCGcGGGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 109 | 0.69 | 0.271076 |
Target: 5'- -gGACGCCGCCggCGCCG-GCaaacgaagcgggaGCCCCGg -3' miRNA: 3'- gaUUGCGGUGG--GCGGCuCG-------------CGGGGUg -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 13067 | 0.69 | 0.265236 |
Target: 5'- -cAGCGCUACCCaGU--GGCGCgCCCGCg -3' miRNA: 3'- gaUUGCGGUGGG-CGgcUCGCG-GGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 8822 | 1.07 | 0.000368 |
Target: 5'- uCUAACGCCACCCGCCGAGCGCCCCACc -3' miRNA: 3'- -GAUUGCGGUGGGCGGCUCGCGGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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