miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30713 5' -61.9 NC_006552.1 + 38463 0.66 0.410631
Target:  5'- -gGAUGCCGCUggugGCCGugccuuuGCGCCCCu- -3'
miRNA:   3'- gaUUGCGGUGGg---CGGCu------CGCGGGGug -5'
30713 5' -61.9 NC_006552.1 + 61648 0.66 0.419541
Target:  5'- -cGAgGCCGCCgGCCGgacguccaaccuGGcCGCCgCACg -3'
miRNA:   3'- gaUUgCGGUGGgCGGC------------UC-GCGGgGUG- -5'
30713 5' -61.9 NC_006552.1 + 37901 0.66 0.419541
Target:  5'- aCUGAuuuCGCUAUCCGCCuuGCGUCCUu- -3'
miRNA:   3'- -GAUU---GCGGUGGGCGGcuCGCGGGGug -5'
30713 5' -61.9 NC_006552.1 + 43721 0.66 0.428566
Target:  5'- -gAACGCCAacgacuCCgGCaCGAggcgcgacacGCGCCCCAg -3'
miRNA:   3'- gaUUGCGGU------GGgCG-GCU----------CGCGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 49851 0.66 0.437705
Target:  5'- --uGCGCCACCgGCuCGAcgccGCGUcggacgCCCGCu -3'
miRNA:   3'- gauUGCGGUGGgCG-GCU----CGCG------GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 61557 0.66 0.437705
Target:  5'- -gGACGCaagCACUCGCCac-CGCCCCAg -3'
miRNA:   3'- gaUUGCG---GUGGGCGGcucGCGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 2758 0.69 0.255106
Target:  5'- -cGACG-UGCCCGCCGGcguuccggcgccgcuGCGCCUCACc -3'
miRNA:   3'- gaUUGCgGUGGGCGGCU---------------CGCGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 46735 0.77 0.080061
Target:  5'- -gAAUGCUGCgggaaCCGCCGcaAGCGCCCCACg -3'
miRNA:   3'- gaUUGCGGUG-----GGCGGC--UCGCGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 16206 0.74 0.119949
Target:  5'- ---cCGCCucCCCGCCGGGCaaGCCCgGCg -3'
miRNA:   3'- gauuGCGGu-GGGCGGCUCG--CGGGgUG- -5'
30713 5' -61.9 NC_006552.1 + 4480 0.73 0.133375
Target:  5'- -aGACgGUCACCCGCCGAGUggugaagccgcaGCCCgACu -3'
miRNA:   3'- gaUUG-CGGUGGGCGGCUCG------------CGGGgUG- -5'
30713 5' -61.9 NC_006552.1 + 16103 0.72 0.164452
Target:  5'- aCUggUGCCGCCgGCaccGCuGCCCCACg -3'
miRNA:   3'- -GAuuGCGGUGGgCGgcuCG-CGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 14904 0.72 0.168766
Target:  5'- -cGACuGgCGCCCGCCGGGCGCUCa-- -3'
miRNA:   3'- gaUUG-CgGUGGGCGGCUCGCGGGgug -5'
30713 5' -61.9 NC_006552.1 + 7937 0.71 0.207054
Target:  5'- -gAACGCC-CUCGCCGAcgGCGCacgugaCCGCa -3'
miRNA:   3'- gaUUGCGGuGGGCGGCU--CGCGg-----GGUG- -5'
30713 5' -61.9 NC_006552.1 + 29117 0.71 0.212336
Target:  5'- uUGGuCGCCACCaGCCGaAGCGCcggcgucaCCCGCg -3'
miRNA:   3'- gAUU-GCGGUGGgCGGC-UCGCG--------GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 60422 0.7 0.223249
Target:  5'- --uGCGUCACCUGC--GGCGCCaCCACu -3'
miRNA:   3'- gauUGCGGUGGGCGgcUCGCGG-GGUG- -5'
30713 5' -61.9 NC_006552.1 + 52582 0.7 0.223249
Target:  5'- aUGAUGUCGCCgGCCGuAGUcuGCCCgGCg -3'
miRNA:   3'- gAUUGCGGUGGgCGGC-UCG--CGGGgUG- -5'
30713 5' -61.9 NC_006552.1 + 47487 0.7 0.228882
Target:  5'- ----aGCCGCgCGCUGAuuuGCGCCCUGCu -3'
miRNA:   3'- gauugCGGUGgGCGGCU---CGCGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 19093 0.7 0.228882
Target:  5'- -gAugGCC-CCCugggucacGCCGAGCaGCUCCGCu -3'
miRNA:   3'- gaUugCGGuGGG--------CGGCUCG-CGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 57855 0.69 0.252623
Target:  5'- --uGCGCCAUCUGUCGuGCugcccGCCCCAg -3'
miRNA:   3'- gauUGCGGUGGGCGGCuCG-----CGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 8822 1.07 0.000368
Target:  5'- uCUAACGCCACCCGCCGAGCGCCCCACc -3'
miRNA:   3'- -GAUUGCGGUGGGCGGCUCGCGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.