miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30713 5' -61.9 NC_006552.1 + 29117 0.71 0.212336
Target:  5'- uUGGuCGCCACCaGCCGaAGCGCcggcgucaCCCGCg -3'
miRNA:   3'- gAUU-GCGGUGGgCGGC-UCGCG--------GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 36508 0.68 0.305411
Target:  5'- -cGGCGCCACgCCGCCuGGCaagaucgGCCUgGCa -3'
miRNA:   3'- gaUUGCGGUG-GGCGGcUCG-------CGGGgUG- -5'
30713 5' -61.9 NC_006552.1 + 37901 0.66 0.419541
Target:  5'- aCUGAuuuCGCUAUCCGCCuuGCGUCCUu- -3'
miRNA:   3'- -GAUU---GCGGUGGGCGGcuCGCGGGGug -5'
30713 5' -61.9 NC_006552.1 + 38463 0.66 0.410631
Target:  5'- -gGAUGCCGCUggugGCCGugccuuuGCGCCCCu- -3'
miRNA:   3'- gaUUGCGGUGGg---CGGCu------CGCGGGGug -5'
30713 5' -61.9 NC_006552.1 + 43721 0.66 0.428566
Target:  5'- -gAACGCCAacgacuCCgGCaCGAggcgcgacacGCGCCCCAg -3'
miRNA:   3'- gaUUGCGGU------GGgCG-GCU----------CGCGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 45642 0.69 0.278354
Target:  5'- -gAGCGCCGgCCGCUagcuGAGCgguguacuGCCCCAg -3'
miRNA:   3'- gaUUGCGGUgGGCGG----CUCG--------CGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 45919 0.67 0.3679
Target:  5'- -cAGCGCCugCUG-CGAGUucaGCcCCCACu -3'
miRNA:   3'- gaUUGCGGugGGCgGCUCG---CG-GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 46735 0.77 0.080061
Target:  5'- -gAAUGCUGCgggaaCCGCCGcaAGCGCCCCACg -3'
miRNA:   3'- gaUUGCGGUG-----GGCGGC--UCGCGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 47089 0.66 0.39317
Target:  5'- aCUGAgccCGCuccCACCCGCCuGGCcaGCCCCGu -3'
miRNA:   3'- -GAUU---GCG---GUGGGCGGcUCG--CGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 47487 0.7 0.228882
Target:  5'- ----aGCCGCgCGCUGAuuuGCGCCCUGCu -3'
miRNA:   3'- gauugCGGUGgGCGGCU---CGCGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 48361 0.69 0.271732
Target:  5'- -gAACGCCACgaCCGaCCGcGCcCCCCGCc -3'
miRNA:   3'- gaUUGCGGUG--GGC-GGCuCGcGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 49851 0.66 0.437705
Target:  5'- --uGCGCCACCgGCuCGAcgccGCGUcggacgCCCGCu -3'
miRNA:   3'- gauUGCGGUGGgCG-GCU----CGCG------GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 51288 0.68 0.320795
Target:  5'- ----gGCCGCCUGCUGAgcaucgguGCGUgCCACg -3'
miRNA:   3'- gauugCGGUGGGCGGCU--------CGCGgGGUG- -5'
30713 5' -61.9 NC_006552.1 + 52014 0.67 0.3679
Target:  5'- --cGCGCCagcaACUCGCCGAGCaggagacaCCCGCc -3'
miRNA:   3'- gauUGCGG----UGGGCGGCUCGcg------GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 52263 0.67 0.388027
Target:  5'- -aAACGCUgaAUCUGCCGGGCgugaucgucgaaaagGCcCCCGCg -3'
miRNA:   3'- gaUUGCGG--UGGGCGGCUCG---------------CG-GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 52582 0.7 0.223249
Target:  5'- aUGAUGUCGCCgGCCGuAGUcuGCCCgGCg -3'
miRNA:   3'- gAUUGCGGUGGgCGGC-UCG--CGGGgUG- -5'
30713 5' -61.9 NC_006552.1 + 53558 0.68 0.313398
Target:  5'- --uGCGCUugUCGCCGu-CGCCCUGCc -3'
miRNA:   3'- gauUGCGGugGGCGGCucGCGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 54516 0.68 0.320795
Target:  5'- --cGCGuUCACCCGCCGcaAGCGCaccuucgCCGCa -3'
miRNA:   3'- gauUGC-GGUGGGCGGC--UCGCGg------GGUG- -5'
30713 5' -61.9 NC_006552.1 + 54877 0.69 0.285105
Target:  5'- gCUGACGaaaGCCCugGCCGAGCcGCCCaugGCg -3'
miRNA:   3'- -GAUUGCgg-UGGG--CGGCUCG-CGGGg--UG- -5'
30713 5' -61.9 NC_006552.1 + 55522 0.67 0.351683
Target:  5'- -gGACGUCAcCCCGUCGAGCcaCCUCGa -3'
miRNA:   3'- gaUUGCGGU-GGGCGGCUCGc-GGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.