miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30713 5' -61.9 NC_006552.1 + 109 0.69 0.271076
Target:  5'- -gGACGCCGCCggCGCCG-GCaaacgaagcgggaGCCCCGg -3'
miRNA:   3'- gaUUGCGGUGG--GCGGCuCG-------------CGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 871 0.66 0.405343
Target:  5'- --uGCGCUGCcuuuccggcuaucguCCGCCcAGCGCCCCu- -3'
miRNA:   3'- gauUGCGGUG---------------GGCGGcUCGCGGGGug -5'
30713 5' -61.9 NC_006552.1 + 1640 0.68 0.313398
Target:  5'- --uGCGCCACCCGCCu-GCGCggCAUc -3'
miRNA:   3'- gauUGCGGUGGGCGGcuCGCGggGUG- -5'
30713 5' -61.9 NC_006552.1 + 2758 0.69 0.255106
Target:  5'- -cGACG-UGCCCGCCGGcguuccggcgccgcuGCGCCUCACc -3'
miRNA:   3'- gaUUGCgGUGGGCGGCU---------------CGCGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 4480 0.73 0.133375
Target:  5'- -aGACgGUCACCCGCCGAGUggugaagccgcaGCCCgACu -3'
miRNA:   3'- gaUUG-CGGUGGGCGGCUCG------------CGGGgUG- -5'
30713 5' -61.9 NC_006552.1 + 7452 0.67 0.359728
Target:  5'- gCUGACGCgacggACCCGCCGAgguacuGCGCaaacagcagUCCGCg -3'
miRNA:   3'- -GAUUGCGg----UGGGCGGCU------CGCG---------GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 7937 0.71 0.207054
Target:  5'- -gAACGCC-CUCGCCGAcgGCGCacgugaCCGCa -3'
miRNA:   3'- gaUUGCGGuGGGCGGCU--CGCGg-----GGUG- -5'
30713 5' -61.9 NC_006552.1 + 8822 1.07 0.000368
Target:  5'- uCUAACGCCACCCGCCGAGCGCCCCACc -3'
miRNA:   3'- -GAUUGCGGUGGGCGGCUCGCGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 10680 0.67 0.359728
Target:  5'- -aAGCGCCACuuGCCaucAGUGCCgCGg -3'
miRNA:   3'- gaUUGCGGUGggCGGc--UCGCGGgGUg -5'
30713 5' -61.9 NC_006552.1 + 11894 0.68 0.291984
Target:  5'- --cGCGCaGCCCGCCGcGCGgCgCACa -3'
miRNA:   3'- gauUGCGgUGGGCGGCuCGCgGgGUG- -5'
30713 5' -61.9 NC_006552.1 + 13067 0.69 0.265236
Target:  5'- -cAGCGCUACCCaGU--GGCGCgCCCGCg -3'
miRNA:   3'- gaUUGCGGUGGG-CGgcUCGCG-GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 14904 0.72 0.168766
Target:  5'- -cGACuGgCGCCCGCCGGGCGCUCa-- -3'
miRNA:   3'- gaUUG-CgGUGGGCGGCUCGCGGGgug -5'
30713 5' -61.9 NC_006552.1 + 16103 0.72 0.164452
Target:  5'- aCUggUGCCGCCgGCaccGCuGCCCCACg -3'
miRNA:   3'- -GAuuGCGGUGGgCGgcuCG-CGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 16206 0.74 0.119949
Target:  5'- ---cCGCCucCCCGCCGGGCaaGCCCgGCg -3'
miRNA:   3'- gauuGCGGu-GGGCGGCUCG--CGGGgUG- -5'
30713 5' -61.9 NC_006552.1 + 16430 0.67 0.3679
Target:  5'- ----gGCCGCUCGCCcAGUcccGCCCCAg -3'
miRNA:   3'- gauugCGGUGGGCGGcUCG---CGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 19093 0.7 0.228882
Target:  5'- -gAugGCC-CCCugggucacGCCGAGCaGCUCCGCu -3'
miRNA:   3'- gaUugCGGuGGG--------CGGCUCG-CGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 19739 0.67 0.3679
Target:  5'- uUGGCGCUGgCCGCUGcGCGCCagGCu -3'
miRNA:   3'- gAUUGCGGUgGGCGGCuCGCGGggUG- -5'
30713 5' -61.9 NC_006552.1 + 20730 0.68 0.298992
Target:  5'- --uGCGCUGCCggCGCCGgcAGaCGCCCCAg -3'
miRNA:   3'- gauUGCGGUGG--GCGGC--UC-GCGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 25647 0.68 0.303975
Target:  5'- -cGGCGUCACCCGCC-AGUcugugcgcgugacaGCCUCAUa -3'
miRNA:   3'- gaUUGCGGUGGGCGGcUCG--------------CGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 26779 0.66 0.410631
Target:  5'- cCUGGCGCacagagGCCCGCaguuGCGCCUUGCc -3'
miRNA:   3'- -GAUUGCGg-----UGGGCGgcu-CGCGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.