miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30713 5' -61.9 NC_006552.1 + 64647 0.67 0.384622
Target:  5'- gCUGuuCGCCGCgCCGCCGGucaGCUUCGCg -3'
miRNA:   3'- -GAUu-GCGGUG-GGCGGCUcg-CGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 63520 0.69 0.285105
Target:  5'- ---cCGCCGCCaGCaCGAGCGUgUCACa -3'
miRNA:   3'- gauuGCGGUGGgCG-GCUCGCGgGGUG- -5'
30713 5' -61.9 NC_006552.1 + 61648 0.66 0.419541
Target:  5'- -cGAgGCCGCCgGCCGgacguccaaccuGGcCGCCgCACg -3'
miRNA:   3'- gaUUgCGGUGGgCGGC------------UC-GCGGgGUG- -5'
30713 5' -61.9 NC_006552.1 + 61557 0.66 0.437705
Target:  5'- -gGACGCaagCACUCGCCac-CGCCCCAg -3'
miRNA:   3'- gaUUGCG---GUGGGCGGcucGCGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 60422 0.7 0.223249
Target:  5'- --uGCGUCACCUGC--GGCGCCaCCACu -3'
miRNA:   3'- gauUGCGGUGGGCGgcUCGCGG-GGUG- -5'
30713 5' -61.9 NC_006552.1 + 60281 0.68 0.335209
Target:  5'- --cGCGCCACCCGgcuggccCUGGGCaucgGCCCCu- -3'
miRNA:   3'- gauUGCGGUGGGC-------GGCUCG----CGGGGug -5'
30713 5' -61.9 NC_006552.1 + 59865 0.67 0.384622
Target:  5'- gCUAcCGCggaACCUGUCGAGgGCCUgACg -3'
miRNA:   3'- -GAUuGCGg--UGGGCGGCUCgCGGGgUG- -5'
30713 5' -61.9 NC_006552.1 + 59440 0.68 0.30613
Target:  5'- -cGGCGaCCAgCaCGCCGAucaGCCCCACc -3'
miRNA:   3'- gaUUGC-GGUgG-GCGGCUcg-CGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 58535 0.66 0.401841
Target:  5'- -cAACGau-CCCGCUGAGCcGCugCCCACu -3'
miRNA:   3'- gaUUGCgguGGGCGGCUCG-CG--GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 57855 0.69 0.252623
Target:  5'- --uGCGCCAUCUGUCGuGCugcccGCCCCAg -3'
miRNA:   3'- gauUGCGGUGGGCGGCuCG-----CGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 56560 0.68 0.326051
Target:  5'- -aGugGCUGCUCGCCccgugGAucauccagcaccucGCGCCCCACc -3'
miRNA:   3'- gaUugCGGUGGGCGG-----CU--------------CGCGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 55522 0.67 0.351683
Target:  5'- -gGACGUCAcCCCGUCGAGCcaCCUCGa -3'
miRNA:   3'- gaUUGCGGU-GGGCGGCUCGc-GGGGUg -5'
30713 5' -61.9 NC_006552.1 + 54877 0.69 0.285105
Target:  5'- gCUGACGaaaGCCCugGCCGAGCcGCCCaugGCg -3'
miRNA:   3'- -GAUUGCgg-UGGG--CGGCUCG-CGGGg--UG- -5'
30713 5' -61.9 NC_006552.1 + 54516 0.68 0.320795
Target:  5'- --cGCGuUCACCCGCCGcaAGCGCaccuucgCCGCa -3'
miRNA:   3'- gauUGC-GGUGGGCGGC--UCGCGg------GGUG- -5'
30713 5' -61.9 NC_006552.1 + 53558 0.68 0.313398
Target:  5'- --uGCGCUugUCGCCGu-CGCCCUGCc -3'
miRNA:   3'- gauUGCGGugGGCGGCucGCGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 52582 0.7 0.223249
Target:  5'- aUGAUGUCGCCgGCCGuAGUcuGCCCgGCg -3'
miRNA:   3'- gAUUGCGGUGGgCGGC-UCG--CGGGgUG- -5'
30713 5' -61.9 NC_006552.1 + 52263 0.67 0.388027
Target:  5'- -aAACGCUgaAUCUGCCGGGCgugaucgucgaaaagGCcCCCGCg -3'
miRNA:   3'- gaUUGCGG--UGGGCGGCUCG---------------CG-GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 52014 0.67 0.3679
Target:  5'- --cGCGCCagcaACUCGCCGAGCaggagacaCCCGCc -3'
miRNA:   3'- gauUGCGG----UGGGCGGCUCGcg------GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 51288 0.68 0.320795
Target:  5'- ----gGCCGCCUGCUGAgcaucgguGCGUgCCACg -3'
miRNA:   3'- gauugCGGUGGGCGGCU--------CGCGgGGUG- -5'
30713 5' -61.9 NC_006552.1 + 49851 0.66 0.437705
Target:  5'- --uGCGCCACCgGCuCGAcgccGCGUcggacgCCCGCu -3'
miRNA:   3'- gauUGCGGUGGgCG-GCU----CGCG------GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.