Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30713 | 5' | -61.9 | NC_006552.1 | + | 48361 | 0.69 | 0.271732 |
Target: 5'- -gAACGCCACgaCCGaCCGcGCcCCCCGCc -3' miRNA: 3'- gaUUGCGGUG--GGC-GGCuCGcGGGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 47487 | 0.7 | 0.228882 |
Target: 5'- ----aGCCGCgCGCUGAuuuGCGCCCUGCu -3' miRNA: 3'- gauugCGGUGgGCGGCU---CGCGGGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 47089 | 0.66 | 0.39317 |
Target: 5'- aCUGAgccCGCuccCACCCGCCuGGCcaGCCCCGu -3' miRNA: 3'- -GAUU---GCG---GUGGGCGGcUCG--CGGGGUg -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 46735 | 0.77 | 0.080061 |
Target: 5'- -gAAUGCUGCgggaaCCGCCGcaAGCGCCCCACg -3' miRNA: 3'- gaUUGCGGUG-----GGCGGC--UCGCGGGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 45919 | 0.67 | 0.3679 |
Target: 5'- -cAGCGCCugCUG-CGAGUucaGCcCCCACu -3' miRNA: 3'- gaUUGCGGugGGCgGCUCG---CG-GGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 45642 | 0.69 | 0.278354 |
Target: 5'- -gAGCGCCGgCCGCUagcuGAGCgguguacuGCCCCAg -3' miRNA: 3'- gaUUGCGGUgGGCGG----CUCG--------CGGGGUg -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 43721 | 0.66 | 0.428566 |
Target: 5'- -gAACGCCAacgacuCCgGCaCGAggcgcgacacGCGCCCCAg -3' miRNA: 3'- gaUUGCGGU------GGgCG-GCU----------CGCGGGGUg -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 38463 | 0.66 | 0.410631 |
Target: 5'- -gGAUGCCGCUggugGCCGugccuuuGCGCCCCu- -3' miRNA: 3'- gaUUGCGGUGGg---CGGCu------CGCGGGGug -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 37901 | 0.66 | 0.419541 |
Target: 5'- aCUGAuuuCGCUAUCCGCCuuGCGUCCUu- -3' miRNA: 3'- -GAUU---GCGGUGGGCGGcuCGCGGGGug -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 36508 | 0.68 | 0.305411 |
Target: 5'- -cGGCGCCACgCCGCCuGGCaagaucgGCCUgGCa -3' miRNA: 3'- gaUUGCGGUG-GGCGGcUCG-------CGGGgUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 29117 | 0.71 | 0.212336 |
Target: 5'- uUGGuCGCCACCaGCCGaAGCGCcggcgucaCCCGCg -3' miRNA: 3'- gAUU-GCGGUGGgCGGC-UCGCG--------GGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 26779 | 0.66 | 0.410631 |
Target: 5'- cCUGGCGCacagagGCCCGCaguuGCGCCUUGCc -3' miRNA: 3'- -GAUUGCGg-----UGGGCGgcu-CGCGGGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 25647 | 0.68 | 0.303975 |
Target: 5'- -cGGCGUCACCCGCC-AGUcugugcgcgugacaGCCUCAUa -3' miRNA: 3'- gaUUGCGGUGGGCGGcUCG--------------CGGGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 20730 | 0.68 | 0.298992 |
Target: 5'- --uGCGCUGCCggCGCCGgcAGaCGCCCCAg -3' miRNA: 3'- gauUGCGGUGG--GCGGC--UC-GCGGGGUg -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 19739 | 0.67 | 0.3679 |
Target: 5'- uUGGCGCUGgCCGCUGcGCGCCagGCu -3' miRNA: 3'- gAUUGCGGUgGGCGGCuCGCGGggUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 19093 | 0.7 | 0.228882 |
Target: 5'- -gAugGCC-CCCugggucacGCCGAGCaGCUCCGCu -3' miRNA: 3'- gaUugCGGuGGG--------CGGCUCG-CGGGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 16430 | 0.67 | 0.3679 |
Target: 5'- ----gGCCGCUCGCCcAGUcccGCCCCAg -3' miRNA: 3'- gauugCGGUGGGCGGcUCG---CGGGGUg -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 16206 | 0.74 | 0.119949 |
Target: 5'- ---cCGCCucCCCGCCGGGCaaGCCCgGCg -3' miRNA: 3'- gauuGCGGu-GGGCGGCUCG--CGGGgUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 16103 | 0.72 | 0.164452 |
Target: 5'- aCUggUGCCGCCgGCaccGCuGCCCCACg -3' miRNA: 3'- -GAuuGCGGUGGgCGgcuCG-CGGGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 14904 | 0.72 | 0.168766 |
Target: 5'- -cGACuGgCGCCCGCCGGGCGCUCa-- -3' miRNA: 3'- gaUUG-CgGUGGGCGGCUCGCGGGgug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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