miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30713 5' -61.9 NC_006552.1 + 11894 0.68 0.291984
Target:  5'- --cGCGCaGCCCGCCGcGCGgCgCACa -3'
miRNA:   3'- gauUGCGgUGGGCGGCuCGCgGgGUG- -5'
30713 5' -61.9 NC_006552.1 + 20730 0.68 0.298992
Target:  5'- --uGCGCUGCCggCGCCGgcAGaCGCCCCAg -3'
miRNA:   3'- gauUGCGGUGG--GCGGC--UC-GCGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 25647 0.68 0.303975
Target:  5'- -cGGCGUCACCCGCC-AGUcugugcgcgugacaGCCUCAUa -3'
miRNA:   3'- gaUUGCGGUGGGCGGcUCG--------------CGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 36508 0.68 0.305411
Target:  5'- -cGGCGCCACgCCGCCuGGCaagaucgGCCUgGCa -3'
miRNA:   3'- gaUUGCGGUG-GGCGGcUCG-------CGGGgUG- -5'
30713 5' -61.9 NC_006552.1 + 59440 0.68 0.30613
Target:  5'- -cGGCGaCCAgCaCGCCGAucaGCCCCACc -3'
miRNA:   3'- gaUUGC-GGUgG-GCGGCUcg-CGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 1640 0.68 0.313398
Target:  5'- --uGCGCCACCCGCCu-GCGCggCAUc -3'
miRNA:   3'- gauUGCGGUGGGCGGcuCGCGggGUG- -5'
30713 5' -61.9 NC_006552.1 + 53558 0.68 0.313398
Target:  5'- --uGCGCUugUCGCCGu-CGCCCUGCc -3'
miRNA:   3'- gauUGCGGugGGCGGCucGCGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 51288 0.68 0.320795
Target:  5'- ----gGCCGCCUGCUGAgcaucgguGCGUgCCACg -3'
miRNA:   3'- gauugCGGUGGGCGGCU--------CGCGgGGUG- -5'
30713 5' -61.9 NC_006552.1 + 54516 0.68 0.320795
Target:  5'- --cGCGuUCACCCGCCGcaAGCGCaccuucgCCGCa -3'
miRNA:   3'- gauUGC-GGUGGGCGGC--UCGCGg------GGUG- -5'
30713 5' -61.9 NC_006552.1 + 56560 0.68 0.326051
Target:  5'- -aGugGCUGCUCGCCccgugGAucauccagcaccucGCGCCCCACc -3'
miRNA:   3'- gaUugCGGUGGGCGG-----CU--------------CGCGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 60281 0.68 0.335209
Target:  5'- --cGCGCCACCCGgcuggccCUGGGCaucgGCCCCu- -3'
miRNA:   3'- gauUGCGGUGGGC-------GGCUCG----CGGGGug -5'
30713 5' -61.9 NC_006552.1 + 55522 0.67 0.351683
Target:  5'- -gGACGUCAcCCCGUCGAGCcaCCUCGa -3'
miRNA:   3'- gaUUGCGGU-GGGCGGCUCGc-GGGGUg -5'
30713 5' -61.9 NC_006552.1 + 7452 0.67 0.359728
Target:  5'- gCUGACGCgacggACCCGCCGAgguacuGCGCaaacagcagUCCGCg -3'
miRNA:   3'- -GAUUGCGg----UGGGCGGCU------CGCG---------GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 10680 0.67 0.359728
Target:  5'- -aAGCGCCACuuGCCaucAGUGCCgCGg -3'
miRNA:   3'- gaUUGCGGUGggCGGc--UCGCGGgGUg -5'
30713 5' -61.9 NC_006552.1 + 16430 0.67 0.3679
Target:  5'- ----gGCCGCUCGCCcAGUcccGCCCCAg -3'
miRNA:   3'- gauugCGGUGGGCGGcUCG---CGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 19739 0.67 0.3679
Target:  5'- uUGGCGCUGgCCGCUGcGCGCCagGCu -3'
miRNA:   3'- gAUUGCGGUgGGCGGCuCGCGGggUG- -5'
30713 5' -61.9 NC_006552.1 + 45919 0.67 0.3679
Target:  5'- -cAGCGCCugCUG-CGAGUucaGCcCCCACu -3'
miRNA:   3'- gaUUGCGGugGGCgGCUCG---CG-GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 52014 0.67 0.3679
Target:  5'- --cGCGCCagcaACUCGCCGAGCaggagacaCCCGCc -3'
miRNA:   3'- gauUGCGG----UGGGCGGCUCGcg------GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 59865 0.67 0.384622
Target:  5'- gCUAcCGCggaACCUGUCGAGgGCCUgACg -3'
miRNA:   3'- -GAUuGCGg--UGGGCGGCUCgCGGGgUG- -5'
30713 5' -61.9 NC_006552.1 + 64647 0.67 0.384622
Target:  5'- gCUGuuCGCCGCgCCGCCGGucaGCUUCGCg -3'
miRNA:   3'- -GAUu-GCGGUG-GGCGGCUcg-CGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.