miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30713 5' -61.9 NC_006552.1 + 60281 0.68 0.335209
Target:  5'- --cGCGCCACCCGgcuggccCUGGGCaucgGCCCCu- -3'
miRNA:   3'- gauUGCGGUGGGC-------GGCUCG----CGGGGug -5'
30713 5' -61.9 NC_006552.1 + 56560 0.68 0.326051
Target:  5'- -aGugGCUGCUCGCCccgugGAucauccagcaccucGCGCCCCACc -3'
miRNA:   3'- gaUugCGGUGGGCGG-----CU--------------CGCGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 51288 0.68 0.320795
Target:  5'- ----gGCCGCCUGCUGAgcaucgguGCGUgCCACg -3'
miRNA:   3'- gauugCGGUGGGCGGCU--------CGCGgGGUG- -5'
30713 5' -61.9 NC_006552.1 + 54516 0.68 0.320795
Target:  5'- --cGCGuUCACCCGCCGcaAGCGCaccuucgCCGCa -3'
miRNA:   3'- gauUGC-GGUGGGCGGC--UCGCGg------GGUG- -5'
30713 5' -61.9 NC_006552.1 + 53558 0.68 0.313398
Target:  5'- --uGCGCUugUCGCCGu-CGCCCUGCc -3'
miRNA:   3'- gauUGCGGugGGCGGCucGCGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 1640 0.68 0.313398
Target:  5'- --uGCGCCACCCGCCu-GCGCggCAUc -3'
miRNA:   3'- gauUGCGGUGGGCGGcuCGCGggGUG- -5'
30713 5' -61.9 NC_006552.1 + 59440 0.68 0.30613
Target:  5'- -cGGCGaCCAgCaCGCCGAucaGCCCCACc -3'
miRNA:   3'- gaUUGC-GGUgG-GCGGCUcg-CGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 36508 0.68 0.305411
Target:  5'- -cGGCGCCACgCCGCCuGGCaagaucgGCCUgGCa -3'
miRNA:   3'- gaUUGCGGUG-GGCGGcUCG-------CGGGgUG- -5'
30713 5' -61.9 NC_006552.1 + 25647 0.68 0.303975
Target:  5'- -cGGCGUCACCCGCC-AGUcugugcgcgugacaGCCUCAUa -3'
miRNA:   3'- gaUUGCGGUGGGCGGcUCG--------------CGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 20730 0.68 0.298992
Target:  5'- --uGCGCUGCCggCGCCGgcAGaCGCCCCAg -3'
miRNA:   3'- gauUGCGGUGG--GCGGC--UC-GCGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 11894 0.68 0.291984
Target:  5'- --cGCGCaGCCCGCCGcGCGgCgCACa -3'
miRNA:   3'- gauUGCGgUGGGCGGCuCGCgGgGUG- -5'
30713 5' -61.9 NC_006552.1 + 54877 0.69 0.285105
Target:  5'- gCUGACGaaaGCCCugGCCGAGCcGCCCaugGCg -3'
miRNA:   3'- -GAUUGCgg-UGGG--CGGCUCG-CGGGg--UG- -5'
30713 5' -61.9 NC_006552.1 + 63520 0.69 0.285105
Target:  5'- ---cCGCCGCCaGCaCGAGCGUgUCACa -3'
miRNA:   3'- gauuGCGGUGGgCG-GCUCGCGgGGUG- -5'
30713 5' -61.9 NC_006552.1 + 45642 0.69 0.278354
Target:  5'- -gAGCGCCGgCCGCUagcuGAGCgguguacuGCCCCAg -3'
miRNA:   3'- gaUUGCGGUgGGCGG----CUCG--------CGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 48361 0.69 0.271732
Target:  5'- -gAACGCCACgaCCGaCCGcGCcCCCCGCc -3'
miRNA:   3'- gaUUGCGGUG--GGC-GGCuCGcGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 109 0.69 0.271076
Target:  5'- -gGACGCCGCCggCGCCG-GCaaacgaagcgggaGCCCCGg -3'
miRNA:   3'- gaUUGCGGUGG--GCGGCuCG-------------CGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 13067 0.69 0.265236
Target:  5'- -cAGCGCUACCCaGU--GGCGCgCCCGCg -3'
miRNA:   3'- gaUUGCGGUGGG-CGgcUCGCG-GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 2758 0.69 0.255106
Target:  5'- -cGACG-UGCCCGCCGGcguuccggcgccgcuGCGCCUCACc -3'
miRNA:   3'- gaUUGCgGUGGGCGGCU---------------CGCGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 57855 0.69 0.252623
Target:  5'- --uGCGCCAUCUGUCGuGCugcccGCCCCAg -3'
miRNA:   3'- gauUGCGGUGGGCGGCuCG-----CGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 19093 0.7 0.228882
Target:  5'- -gAugGCC-CCCugggucacGCCGAGCaGCUCCGCu -3'
miRNA:   3'- gaUugCGGuGGG--------CGGCUCG-CGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.