Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30713 | 5' | -61.9 | NC_006552.1 | + | 19739 | 0.67 | 0.3679 |
Target: 5'- uUGGCGCUGgCCGCUGcGCGCCagGCu -3' miRNA: 3'- gAUUGCGGUgGGCGGCuCGCGGggUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 61557 | 0.66 | 0.437705 |
Target: 5'- -gGACGCaagCACUCGCCac-CGCCCCAg -3' miRNA: 3'- gaUUGCG---GUGGGCGGcucGCGGGGUg -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 49851 | 0.66 | 0.437705 |
Target: 5'- --uGCGCCACCgGCuCGAcgccGCGUcggacgCCCGCu -3' miRNA: 3'- gauUGCGGUGGgCG-GCU----CGCG------GGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 26779 | 0.66 | 0.410631 |
Target: 5'- cCUGGCGCacagagGCCCGCaguuGCGCCUUGCc -3' miRNA: 3'- -GAUUGCGg-----UGGGCGgcu-CGCGGGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 37901 | 0.66 | 0.419541 |
Target: 5'- aCUGAuuuCGCUAUCCGCCuuGCGUCCUu- -3' miRNA: 3'- -GAUU---GCGGUGGGCGGcuCGCGGGGug -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 61648 | 0.66 | 0.419541 |
Target: 5'- -cGAgGCCGCCgGCCGgacguccaaccuGGcCGCCgCACg -3' miRNA: 3'- gaUUgCGGUGGgCGGC------------UC-GCGGgGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 38463 | 0.66 | 0.410631 |
Target: 5'- -gGAUGCCGCUggugGCCGugccuuuGCGCCCCu- -3' miRNA: 3'- gaUUGCGGUGGg---CGGCu------CGCGGGGug -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 43721 | 0.66 | 0.428566 |
Target: 5'- -gAACGCCAacgacuCCgGCaCGAggcgcgacacGCGCCCCAg -3' miRNA: 3'- gaUUGCGGU------GGgCG-GCU----------CGCGGGGUg -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 52014 | 0.67 | 0.3679 |
Target: 5'- --cGCGCCagcaACUCGCCGAGCaggagacaCCCGCc -3' miRNA: 3'- gauUGCGG----UGGGCGGCUCGcg------GGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 45919 | 0.67 | 0.3679 |
Target: 5'- -cAGCGCCugCUG-CGAGUucaGCcCCCACu -3' miRNA: 3'- gaUUGCGGugGGCgGCUCG---CG-GGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 59865 | 0.67 | 0.384622 |
Target: 5'- gCUAcCGCggaACCUGUCGAGgGCCUgACg -3' miRNA: 3'- -GAUuGCGg--UGGGCGGCUCgCGGGgUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 16430 | 0.67 | 0.3679 |
Target: 5'- ----gGCCGCUCGCCcAGUcccGCCCCAg -3' miRNA: 3'- gauugCGGUGGGCGGcUCG---CGGGGUg -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 10680 | 0.67 | 0.359728 |
Target: 5'- -aAGCGCCACuuGCCaucAGUGCCgCGg -3' miRNA: 3'- gaUUGCGGUGggCGGc--UCGCGGgGUg -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 7452 | 0.67 | 0.359728 |
Target: 5'- gCUGACGCgacggACCCGCCGAgguacuGCGCaaacagcagUCCGCg -3' miRNA: 3'- -GAUUGCGg----UGGGCGGCU------CGCG---------GGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 55522 | 0.67 | 0.351683 |
Target: 5'- -gGACGUCAcCCCGUCGAGCcaCCUCGa -3' miRNA: 3'- gaUUGCGGU-GGGCGGCUCGc-GGGGUg -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 60281 | 0.68 | 0.335209 |
Target: 5'- --cGCGCCACCCGgcuggccCUGGGCaucgGCCCCu- -3' miRNA: 3'- gauUGCGGUGGGC-------GGCUCG----CGGGGug -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 56560 | 0.68 | 0.326051 |
Target: 5'- -aGugGCUGCUCGCCccgugGAucauccagcaccucGCGCCCCACc -3' miRNA: 3'- gaUugCGGUGGGCGG-----CU--------------CGCGGGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 54516 | 0.68 | 0.320795 |
Target: 5'- --cGCGuUCACCCGCCGcaAGCGCaccuucgCCGCa -3' miRNA: 3'- gauUGC-GGUGGGCGGC--UCGCGg------GGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 51288 | 0.68 | 0.320795 |
Target: 5'- ----gGCCGCCUGCUGAgcaucgguGCGUgCCACg -3' miRNA: 3'- gauugCGGUGGGCGGCU--------CGCGgGGUG- -5' |
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30713 | 5' | -61.9 | NC_006552.1 | + | 1640 | 0.68 | 0.313398 |
Target: 5'- --uGCGCCACCCGCCu-GCGCggCAUc -3' miRNA: 3'- gauUGCGGUGGGCGGcuCGCGggGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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