miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30714 5' -61 NC_006552.1 + 48413 0.66 0.487442
Target:  5'- cCUuCGCCAgCCGCGCcGGC-UGCCa-- -3'
miRNA:   3'- -GAuGCGGU-GGCGCGuCCGuGCGGagc -5'
30714 5' -61 NC_006552.1 + 8765 0.7 0.259971
Target:  5'- -gACGCCGCCcUGUGGGCGauucaaccaUGCCUCGu -3'
miRNA:   3'- gaUGCGGUGGcGCGUCCGU---------GCGGAGC- -5'
30714 5' -61 NC_006552.1 + 7977 0.7 0.259971
Target:  5'- uCUACGaCCGCCuuuacCGCcacuGGCAcCGCCUCGa -3'
miRNA:   3'- -GAUGC-GGUGGc----GCGu---CCGU-GCGGAGC- -5'
30714 5' -61 NC_006552.1 + 57971 0.7 0.259971
Target:  5'- ---aGCCGCUGcCGCGGGCcuGCGCCaUCa -3'
miRNA:   3'- gaugCGGUGGC-GCGUCCG--UGCGG-AGc -5'
30714 5' -61 NC_006552.1 + 42020 0.7 0.26638
Target:  5'- -aGCGCCGCCaCGUccaGGGUaaACGUCUCGg -3'
miRNA:   3'- gaUGCGGUGGcGCG---UCCG--UGCGGAGC- -5'
30714 5' -61 NC_006552.1 + 12721 0.7 0.26638
Target:  5'- -aACGCCAgCGCGUGGGCAa-CCUgCGg -3'
miRNA:   3'- gaUGCGGUgGCGCGUCCGUgcGGA-GC- -5'
30714 5' -61 NC_006552.1 + 54441 0.7 0.26638
Target:  5'- aUGCGCUGCUGCGCggugcucaGGGCAUGCagaUUGg -3'
miRNA:   3'- gAUGCGGUGGCGCG--------UCCGUGCGg--AGC- -5'
30714 5' -61 NC_006552.1 + 43215 0.7 0.272916
Target:  5'- gUACGCgACCGUGCAGcGCcccaguCGCCUg- -3'
miRNA:   3'- gAUGCGgUGGCGCGUC-CGu-----GCGGAgc -5'
30714 5' -61 NC_006552.1 + 32435 0.7 0.27958
Target:  5'- -cGCGCCAggUCGC-CGGGCACGCUaCGc -3'
miRNA:   3'- gaUGCGGU--GGCGcGUCCGUGCGGaGC- -5'
30714 5' -61 NC_006552.1 + 11889 0.7 0.253067
Target:  5'- -aGC-CCGCCGCGCGGcGCACaacaucaGCUUCGa -3'
miRNA:   3'- gaUGcGGUGGCGCGUC-CGUG-------CGGAGC- -5'
30714 5' -61 NC_006552.1 + 1641 0.71 0.240902
Target:  5'- gUGCGCCACCcgccuGCGC-GGCAUcgucgaaGCCUUGg -3'
miRNA:   3'- gAUGCGGUGG-----CGCGuCCGUG-------CGGAGC- -5'
30714 5' -61 NC_006552.1 + 2437 0.71 0.2298
Target:  5'- -gGCGCUGCCGCGCcuGCgagcgACGCCUgGa -3'
miRNA:   3'- gaUGCGGUGGCGCGucCG-----UGCGGAgC- -5'
30714 5' -61 NC_006552.1 + 50052 0.78 0.080173
Target:  5'- aCU-CGUCGCCGCGCAaGCGCGCUUCa -3'
miRNA:   3'- -GAuGCGGUGGCGCGUcCGUGCGGAGc -5'
30714 5' -61 NC_006552.1 + 21111 0.78 0.080173
Target:  5'- uCUuCGCCGCCGCGCucuuGGCcgGCGCCUgGg -3'
miRNA:   3'- -GAuGCGGUGGCGCGu---CCG--UGCGGAgC- -5'
30714 5' -61 NC_006552.1 + 52350 0.74 0.143624
Target:  5'- gCUGCGCUGcCCG-GCGGGCcuggauuuccugcuGCGCCUCGg -3'
miRNA:   3'- -GAUGCGGU-GGCgCGUCCG--------------UGCGGAGC- -5'
30714 5' -61 NC_006552.1 + 39080 0.73 0.17831
Target:  5'- -aGCGCuCAUCGUGCAGGUgguaggccaGgGCCUCGg -3'
miRNA:   3'- gaUGCG-GUGGCGCGUCCG---------UgCGGAGC- -5'
30714 5' -61 NC_006552.1 + 25912 0.72 0.182959
Target:  5'- -aGCGCUGCCgGCGCAggaagcGGCAgGCCUCc -3'
miRNA:   3'- gaUGCGGUGG-CGCGU------CCGUgCGGAGc -5'
30714 5' -61 NC_006552.1 + 55796 0.72 0.187715
Target:  5'- --uCGCC-CCGUGC-GGCGCGCUUCa -3'
miRNA:   3'- gauGCGGuGGCGCGuCCGUGCGGAGc -5'
30714 5' -61 NC_006552.1 + 38751 0.72 0.20264
Target:  5'- -gGCGCCgacuccuggggGCCGCGCAGcCACGCCa-- -3'
miRNA:   3'- gaUGCGG-----------UGGCGCGUCcGUGCGGagc -5'
30714 5' -61 NC_006552.1 + 20732 0.71 0.2298
Target:  5'- aCUGCGCUGCCgGCGCcGGCagACGCCcCa -3'
miRNA:   3'- -GAUGCGGUGG-CGCGuCCG--UGCGGaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.