miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30714 5' -61 NC_006552.1 + 108 0.67 0.384799
Target:  5'- -gACGCCGCCgGCGCcGGCAaacgaagcgggaGCCcCGg -3'
miRNA:   3'- gaUGCGGUGG-CGCGuCCGUg-----------CGGaGC- -5'
30714 5' -61 NC_006552.1 + 423 0.69 0.300348
Target:  5'- -cGCGCCACCGaCGCccuGGGCAuccUGCCg-- -3'
miRNA:   3'- gaUGCGGUGGC-GCG---UCCGU---GCGGagc -5'
30714 5' -61 NC_006552.1 + 1641 0.71 0.240902
Target:  5'- gUGCGCCACCcgccuGCGC-GGCAUcgucgaaGCCUUGg -3'
miRNA:   3'- gAUGCGGUGG-----CGCGuCCGUG-------CGGAGC- -5'
30714 5' -61 NC_006552.1 + 1965 0.66 0.439896
Target:  5'- -cGCGgCACgUGCGCcGGCugugccuauCGCCUCGg -3'
miRNA:   3'- gaUGCgGUG-GCGCGuCCGu--------GCGGAGC- -5'
30714 5' -61 NC_006552.1 + 2437 0.71 0.2298
Target:  5'- -gGCGCUGCCGCGCcuGCgagcgACGCCUgGa -3'
miRNA:   3'- gaUGCGGUGGCGCGucCG-----UGCGGAgC- -5'
30714 5' -61 NC_006552.1 + 2737 0.66 0.452948
Target:  5'- -gGCGCCGCUGCGCcucaccgaguggaaaGaaGGCGCGCUg-- -3'
miRNA:   3'- gaUGCGGUGGCGCG---------------U--CCGUGCGGagc -5'
30714 5' -61 NC_006552.1 + 3218 0.68 0.369681
Target:  5'- aUGCGCCGCUGUGCAGcaGCGagGCCg-- -3'
miRNA:   3'- gAUGCGGUGGCGCGUC--CGUg-CGGagc -5'
30714 5' -61 NC_006552.1 + 3493 0.66 0.477732
Target:  5'- -cACGCCggcauccucACCGCGCgcGGGUACGCg--- -3'
miRNA:   3'- gaUGCGG---------UGGCGCG--UCCGUGCGgagc -5'
30714 5' -61 NC_006552.1 + 4640 0.66 0.439896
Target:  5'- --uCGCCGgcgacUCGcCGCAGGCAUGucCCUCGa -3'
miRNA:   3'- gauGCGGU-----GGC-GCGUCCGUGC--GGAGC- -5'
30714 5' -61 NC_006552.1 + 4942 0.69 0.30753
Target:  5'- -aACGCgGCCGCGCgcGGGCuuuccCGCCgCGc -3'
miRNA:   3'- gaUGCGgUGGCGCG--UCCGu----GCGGaGC- -5'
30714 5' -61 NC_006552.1 + 7977 0.7 0.259971
Target:  5'- uCUACGaCCGCCuuuacCGCcacuGGCAcCGCCUCGa -3'
miRNA:   3'- -GAUGC-GGUGGc----GCGu---CCGU-GCGGAGC- -5'
30714 5' -61 NC_006552.1 + 8765 0.7 0.259971
Target:  5'- -gACGCCGCCcUGUGGGCGauucaaccaUGCCUCGu -3'
miRNA:   3'- gaUGCGGUGGcGCGUCCGU---------GCGGAGC- -5'
30714 5' -61 NC_006552.1 + 9390 1.09 0.000343
Target:  5'- aCUACGCCACCGCGCAGGCACGCCUCGg -3'
miRNA:   3'- -GAUGCGGUGGCGCGUCCGUGCGGAGC- -5'
30714 5' -61 NC_006552.1 + 11767 0.68 0.353366
Target:  5'- gCUAuCGCUcCCGCGCacAGGuCGCGCUUCc -3'
miRNA:   3'- -GAU-GCGGuGGCGCG--UCC-GUGCGGAGc -5'
30714 5' -61 NC_006552.1 + 11889 0.7 0.253067
Target:  5'- -aGC-CCGCCGCGCGGcGCACaacaucaGCUUCGa -3'
miRNA:   3'- gaUGcGGUGGCGCGUC-CGUG-------CGGAGC- -5'
30714 5' -61 NC_006552.1 + 12312 0.67 0.386504
Target:  5'- gUACGCCAUCGCuaccGCAaGCACcCCUCc -3'
miRNA:   3'- gAUGCGGUGGCG----CGUcCGUGcGGAGc -5'
30714 5' -61 NC_006552.1 + 12721 0.7 0.26638
Target:  5'- -aACGCCAgCGCGUGGGCAa-CCUgCGg -3'
miRNA:   3'- gaUGCGGUgGCGCGUCCGUgcGGA-GC- -5'
30714 5' -61 NC_006552.1 + 12882 0.66 0.458606
Target:  5'- cCUGacuaGCCACCucGCGCcGGCcACGCCg-- -3'
miRNA:   3'- -GAUg---CGGUGG--CGCGuCCG-UGCGGagc -5'
30714 5' -61 NC_006552.1 + 13230 0.67 0.386504
Target:  5'- -aACGCCAaCGCGaagaacuGGCACGCCa-- -3'
miRNA:   3'- gaUGCGGUgGCGCgu-----CCGUGCGGagc -5'
30714 5' -61 NC_006552.1 + 15616 0.67 0.386504
Target:  5'- -aGCGCCacaACCGCGCAGcGUucaacuGCGCC-Ca -3'
miRNA:   3'- gaUGCGG---UGGCGCGUC-CG------UGCGGaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.