miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30714 5' -61 NC_006552.1 + 62464 0.69 0.31044
Target:  5'- -gGCGCCAUCGCGCgcuuugccccguuucAGGCugG-UUCGa -3'
miRNA:   3'- gaUGCGGUGGCGCG---------------UCCGugCgGAGC- -5'
30714 5' -61 NC_006552.1 + 59955 0.68 0.353366
Target:  5'- uUGCGCCACUucaGCAGGUcgucgcACGCCUg- -3'
miRNA:   3'- gAUGCGGUGGcg-CGUCCG------UGCGGAgc -5'
30714 5' -61 NC_006552.1 + 59764 0.67 0.403825
Target:  5'- gCUGCGCgccaguuguuCGCCGCGCuGGCGgGUgaUCGg -3'
miRNA:   3'- -GAUGCG----------GUGGCGCGuCCGUgCGg-AGC- -5'
30714 5' -61 NC_006552.1 + 59536 0.68 0.369681
Target:  5'- -aACGCCcCCGgauggccucgaUGCGGGCAgCGCuCUCGg -3'
miRNA:   3'- gaUGCGGuGGC-----------GCGUCCGU-GCG-GAGC- -5'
30714 5' -61 NC_006552.1 + 58053 0.67 0.395103
Target:  5'- -cAgGCCAUCGa-CAGGCGCGCCa-- -3'
miRNA:   3'- gaUgCGGUGGCgcGUCCGUGCGGagc -5'
30714 5' -61 NC_006552.1 + 57971 0.7 0.259971
Target:  5'- ---aGCCGCUGcCGCGGGCcuGCGCCaUCa -3'
miRNA:   3'- gaugCGGUGGC-GCGUCCG--UGCGG-AGc -5'
30714 5' -61 NC_006552.1 + 56784 0.69 0.329861
Target:  5'- aCUGCucgggGCUcagGCCGCGcCAGGCGCGCagcaguccCUCGg -3'
miRNA:   3'- -GAUG-----CGG---UGGCGC-GUCCGUGCG--------GAGC- -5'
30714 5' -61 NC_006552.1 + 55796 0.72 0.187715
Target:  5'- --uCGCC-CCGUGC-GGCGCGCUUCa -3'
miRNA:   3'- gauGCGGuGGCGCGuCCGUGCGGAGc -5'
30714 5' -61 NC_006552.1 + 55770 0.66 0.448262
Target:  5'- ---aGCCAUCGCGUAGGCcaccaaaucauccACGCUUa- -3'
miRNA:   3'- gaugCGGUGGCGCGUCCG-------------UGCGGAgc -5'
30714 5' -61 NC_006552.1 + 54734 0.66 0.487442
Target:  5'- -gGCGCaggcgaGCCaGCGCAGuGC-CGCCUUc -3'
miRNA:   3'- gaUGCGg-----UGG-CGCGUC-CGuGCGGAGc -5'
30714 5' -61 NC_006552.1 + 54441 0.7 0.26638
Target:  5'- aUGCGCUGCUGCGCggugcucaGGGCAUGCagaUUGg -3'
miRNA:   3'- gAUGCGGUGGCGCG--------UCCGUGCGg--AGC- -5'
30714 5' -61 NC_006552.1 + 53622 0.66 0.449197
Target:  5'- uUGCuGCCACUGCGCcGGCccaGgGCCUg- -3'
miRNA:   3'- gAUG-CGGUGGCGCGuCCG---UgCGGAgc -5'
30714 5' -61 NC_006552.1 + 52832 0.66 0.458606
Target:  5'- -gGCGUCGCgGCGCGcuucugcaacGGCcuGCGCgUCGg -3'
miRNA:   3'- gaUGCGGUGgCGCGU----------CCG--UGCGgAGC- -5'
30714 5' -61 NC_006552.1 + 52471 0.67 0.430705
Target:  5'- aUACGCUguuCCgGCGuCAGGCgcaugaACGCCUCc -3'
miRNA:   3'- gAUGCGGu--GG-CGC-GUCCG------UGCGGAGc -5'
30714 5' -61 NC_006552.1 + 52350 0.74 0.143624
Target:  5'- gCUGCGCUGcCCG-GCGGGCcuggauuuccugcuGCGCCUCGg -3'
miRNA:   3'- -GAUGCGGU-GGCgCGUCCG--------------UGCGGAGC- -5'
30714 5' -61 NC_006552.1 + 50673 0.66 0.439896
Target:  5'- uCUuCGCCGuuGuCGCGGGC-CGCCa-- -3'
miRNA:   3'- -GAuGCGGUggC-GCGUCCGuGCGGagc -5'
30714 5' -61 NC_006552.1 + 50094 0.68 0.361459
Target:  5'- gCUGCGgCuuCGC-CAGGUuCGCCUCGa -3'
miRNA:   3'- -GAUGCgGugGCGcGUCCGuGCGGAGC- -5'
30714 5' -61 NC_006552.1 + 50052 0.78 0.080173
Target:  5'- aCU-CGUCGCCGCGCAaGCGCGCUUCa -3'
miRNA:   3'- -GAuGCGGUGGCGCGUcCGUGCGGAGc -5'
30714 5' -61 NC_006552.1 + 48413 0.66 0.487442
Target:  5'- cCUuCGCCAgCCGCGCcGGC-UGCCa-- -3'
miRNA:   3'- -GAuGCGGU-GGCGCGuCCGuGCGGagc -5'
30714 5' -61 NC_006552.1 + 47600 0.68 0.337566
Target:  5'- aUGCGCUggGCgGCGCGGGuuuggaaacccCugGCCUCu -3'
miRNA:   3'- gAUGCGG--UGgCGCGUCC-----------GugCGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.