miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30714 5' -61 NC_006552.1 + 16509 0.66 0.468119
Target:  5'- uCUACGCCcggguUgGCGCcguccGGCcCGCCUCa -3'
miRNA:   3'- -GAUGCGGu----GgCGCGu----CCGuGCGGAGc -5'
30714 5' -61 NC_006552.1 + 19897 0.68 0.343037
Target:  5'- aUAgGCCAUgGCGUAguuggcccaugugcGGUACGCCUUGc -3'
miRNA:   3'- gAUgCGGUGgCGCGU--------------CCGUGCGGAGC- -5'
30714 5' -61 NC_006552.1 + 20732 0.71 0.2298
Target:  5'- aCUGCGCUGCCgGCGCcGGCagACGCCcCa -3'
miRNA:   3'- -GAUGCGGUGG-CGCGuCCG--UGCGGaGc -5'
30714 5' -61 NC_006552.1 + 21111 0.78 0.080173
Target:  5'- uCUuCGCCGCCGCGCucuuGGCcgGCGCCUgGg -3'
miRNA:   3'- -GAuGCGGUGGCGCGu---CCG--UGCGGAgC- -5'
30714 5' -61 NC_006552.1 + 22900 0.66 0.477732
Target:  5'- -gGCGCCAggCGUGCAGaaacuccgguaGCGCGCUUCu -3'
miRNA:   3'- gaUGCGGUg-GCGCGUC-----------CGUGCGGAGc -5'
30714 5' -61 NC_006552.1 + 25912 0.72 0.182959
Target:  5'- -aGCGCUGCCgGCGCAggaagcGGCAgGCCUCc -3'
miRNA:   3'- gaUGCGGUGG-CGCGU------CCGUgCGGAGc -5'
30714 5' -61 NC_006552.1 + 26507 0.69 0.314843
Target:  5'- ---gGCUACCGCGCccuuGGUACG-CUCGa -3'
miRNA:   3'- gaugCGGUGGCGCGu---CCGUGCgGAGC- -5'
30714 5' -61 NC_006552.1 + 31676 0.69 0.329861
Target:  5'- -aGCGCCuuGCUggaacugguGCGCAGGCGCGCagCGg -3'
miRNA:   3'- gaUGCGG--UGG---------CGCGUCCGUGCGgaGC- -5'
30714 5' -61 NC_006552.1 + 32435 0.7 0.27958
Target:  5'- -cGCGCCAggUCGC-CGGGCACGCUaCGc -3'
miRNA:   3'- gaUGCGGU--GGCGcGUCCGUGCGGaGC- -5'
30714 5' -61 NC_006552.1 + 32854 0.68 0.361459
Target:  5'- ---aGCCuGCCGCGCAcGGCG-GCUUCGc -3'
miRNA:   3'- gaugCGG-UGGCGCGU-CCGUgCGGAGC- -5'
30714 5' -61 NC_006552.1 + 34007 0.7 0.286373
Target:  5'- -cACuCCugCGCGCAGGCGCucagaCCUUGa -3'
miRNA:   3'- gaUGcGGugGCGCGUCCGUGc----GGAGC- -5'
30714 5' -61 NC_006552.1 + 37038 0.68 0.353366
Target:  5'- -gGCGCCACCGgacgccauUGCAGGCGCacgaagGCCgaacCGa -3'
miRNA:   3'- gaUGCGGUGGC--------GCGUCCGUG------CGGa---GC- -5'
30714 5' -61 NC_006552.1 + 38470 0.66 0.468119
Target:  5'- -gGCGUCGCCGUGCaguGGGCuuUGCCa-- -3'
miRNA:   3'- gaUGCGGUGGCGCG---UCCGu-GCGGagc -5'
30714 5' -61 NC_006552.1 + 38751 0.72 0.20264
Target:  5'- -gGCGCCgacuccuggggGCCGCGCAGcCACGCCa-- -3'
miRNA:   3'- gaUGCGG-----------UGGCGCGUCcGUGCGGagc -5'
30714 5' -61 NC_006552.1 + 39080 0.73 0.17831
Target:  5'- -aGCGCuCAUCGUGCAGGUgguaggccaGgGCCUCGg -3'
miRNA:   3'- gaUGCG-GUGGCGCGUCCG---------UgCGGAGC- -5'
30714 5' -61 NC_006552.1 + 39617 0.66 0.439896
Target:  5'- gUACGCUgaGCCGCGggaAGGCaAUGCCguuuUCGg -3'
miRNA:   3'- gAUGCGG--UGGCGCg--UCCG-UGCGG----AGC- -5'
30714 5' -61 NC_006552.1 + 42020 0.7 0.26638
Target:  5'- -aGCGCCGCCaCGUccaGGGUaaACGUCUCGg -3'
miRNA:   3'- gaUGCGGUGGcGCG---UCCG--UGCGGAGC- -5'
30714 5' -61 NC_006552.1 + 43215 0.7 0.272916
Target:  5'- gUACGCgACCGUGCAGcGCcccaguCGCCUg- -3'
miRNA:   3'- gAUGCGgUGGCGCGUC-CGu-----GCGGAgc -5'
30714 5' -61 NC_006552.1 + 43768 0.66 0.439896
Target:  5'- --gUGCCuGCCGCGCAGGCcccgGCCg-- -3'
miRNA:   3'- gauGCGG-UGGCGCGUCCGug--CGGagc -5'
30714 5' -61 NC_006552.1 + 45141 0.66 0.477732
Target:  5'- aUACGCCugcacguCUGCGC-GGUAgGCgUCGa -3'
miRNA:   3'- gAUGCGGu------GGCGCGuCCGUgCGgAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.