Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30714 | 5' | -61 | NC_006552.1 | + | 46201 | 0.68 | 0.369681 |
Target: 5'- aCUACGCCACCGUcgGCAaaaaacaucuccGGCuuGCCg-- -3' miRNA: 3'- -GAUGCGGUGGCG--CGU------------CCGugCGGagc -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 47600 | 0.68 | 0.337566 |
Target: 5'- aUGCGCUggGCgGCGCGGGuuuggaaacccCugGCCUCu -3' miRNA: 3'- gAUGCGG--UGgCGCGUCC-----------GugCGGAGc -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 48413 | 0.66 | 0.487442 |
Target: 5'- cCUuCGCCAgCCGCGCcGGC-UGCCa-- -3' miRNA: 3'- -GAuGCGGU-GGCGCGuCCGuGCGGagc -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 50052 | 0.78 | 0.080173 |
Target: 5'- aCU-CGUCGCCGCGCAaGCGCGCUUCa -3' miRNA: 3'- -GAuGCGGUGGCGCGUcCGUGCGGAGc -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 50094 | 0.68 | 0.361459 |
Target: 5'- gCUGCGgCuuCGC-CAGGUuCGCCUCGa -3' miRNA: 3'- -GAUGCgGugGCGcGUCCGuGCGGAGC- -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 50673 | 0.66 | 0.439896 |
Target: 5'- uCUuCGCCGuuGuCGCGGGC-CGCCa-- -3' miRNA: 3'- -GAuGCGGUggC-GCGUCCGuGCGGagc -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 52350 | 0.74 | 0.143624 |
Target: 5'- gCUGCGCUGcCCG-GCGGGCcuggauuuccugcuGCGCCUCGg -3' miRNA: 3'- -GAUGCGGU-GGCgCGUCCG--------------UGCGGAGC- -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 52471 | 0.67 | 0.430705 |
Target: 5'- aUACGCUguuCCgGCGuCAGGCgcaugaACGCCUCc -3' miRNA: 3'- gAUGCGGu--GG-CGC-GUCCG------UGCGGAGc -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 52832 | 0.66 | 0.458606 |
Target: 5'- -gGCGUCGCgGCGCGcuucugcaacGGCcuGCGCgUCGg -3' miRNA: 3'- gaUGCGGUGgCGCGU----------CCG--UGCGgAGC- -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 53622 | 0.66 | 0.449197 |
Target: 5'- uUGCuGCCACUGCGCcGGCccaGgGCCUg- -3' miRNA: 3'- gAUG-CGGUGGCGCGuCCG---UgCGGAgc -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 54441 | 0.7 | 0.26638 |
Target: 5'- aUGCGCUGCUGCGCggugcucaGGGCAUGCagaUUGg -3' miRNA: 3'- gAUGCGGUGGCGCG--------UCCGUGCGg--AGC- -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 54734 | 0.66 | 0.487442 |
Target: 5'- -gGCGCaggcgaGCCaGCGCAGuGC-CGCCUUc -3' miRNA: 3'- gaUGCGg-----UGG-CGCGUC-CGuGCGGAGc -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 55770 | 0.66 | 0.448262 |
Target: 5'- ---aGCCAUCGCGUAGGCcaccaaaucauccACGCUUa- -3' miRNA: 3'- gaugCGGUGGCGCGUCCG-------------UGCGGAgc -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 55796 | 0.72 | 0.187715 |
Target: 5'- --uCGCC-CCGUGC-GGCGCGCUUCa -3' miRNA: 3'- gauGCGGuGGCGCGuCCGUGCGGAGc -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 56784 | 0.69 | 0.329861 |
Target: 5'- aCUGCucgggGCUcagGCCGCGcCAGGCGCGCagcaguccCUCGg -3' miRNA: 3'- -GAUG-----CGG---UGGCGC-GUCCGUGCG--------GAGC- -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 57971 | 0.7 | 0.259971 |
Target: 5'- ---aGCCGCUGcCGCGGGCcuGCGCCaUCa -3' miRNA: 3'- gaugCGGUGGC-GCGUCCG--UGCGG-AGc -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 58053 | 0.67 | 0.395103 |
Target: 5'- -cAgGCCAUCGa-CAGGCGCGCCa-- -3' miRNA: 3'- gaUgCGGUGGCgcGUCCGUGCGGagc -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 59536 | 0.68 | 0.369681 |
Target: 5'- -aACGCCcCCGgauggccucgaUGCGGGCAgCGCuCUCGg -3' miRNA: 3'- gaUGCGGuGGC-----------GCGUCCGU-GCG-GAGC- -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 59764 | 0.67 | 0.403825 |
Target: 5'- gCUGCGCgccaguuguuCGCCGCGCuGGCGgGUgaUCGg -3' miRNA: 3'- -GAUGCG----------GUGGCGCGuCCGUgCGg-AGC- -5' |
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30714 | 5' | -61 | NC_006552.1 | + | 59955 | 0.68 | 0.353366 |
Target: 5'- uUGCGCCACUucaGCAGGUcgucgcACGCCUg- -3' miRNA: 3'- gAUGCGGUGGcg-CGUCCG------UGCGGAgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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