miRNA display CGI


Results 41 - 60 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30714 5' -61 NC_006552.1 + 25912 0.72 0.182959
Target:  5'- -aGCGCUGCCgGCGCAggaagcGGCAgGCCUCc -3'
miRNA:   3'- gaUGCGGUGG-CGCGU------CCGUgCGGAGc -5'
30714 5' -61 NC_006552.1 + 39080 0.73 0.17831
Target:  5'- -aGCGCuCAUCGUGCAGGUgguaggccaGgGCCUCGg -3'
miRNA:   3'- gaUGCG-GUGGCGCGUCCG---------UgCGGAGC- -5'
30714 5' -61 NC_006552.1 + 52350 0.74 0.143624
Target:  5'- gCUGCGCUGcCCG-GCGGGCcuggauuuccugcuGCGCCUCGg -3'
miRNA:   3'- -GAUGCGGU-GGCgCGUCCG--------------UGCGGAGC- -5'
30714 5' -61 NC_006552.1 + 21111 0.78 0.080173
Target:  5'- uCUuCGCCGCCGCGCucuuGGCcgGCGCCUgGg -3'
miRNA:   3'- -GAuGCGGUGGCGCGu---CCG--UGCGGAgC- -5'
30714 5' -61 NC_006552.1 + 50052 0.78 0.080173
Target:  5'- aCU-CGUCGCCGCGCAaGCGCGCUUCa -3'
miRNA:   3'- -GAuGCGGUGGCGCGUcCGUGCGGAGc -5'
30714 5' -61 NC_006552.1 + 57971 0.7 0.259971
Target:  5'- ---aGCCGCUGcCGCGGGCcuGCGCCaUCa -3'
miRNA:   3'- gaugCGGUGGC-GCGUCCG--UGCGG-AGc -5'
30714 5' -61 NC_006552.1 + 42020 0.7 0.26638
Target:  5'- -aGCGCCGCCaCGUccaGGGUaaACGUCUCGg -3'
miRNA:   3'- gaUGCGGUGGcGCG---UCCG--UGCGGAGC- -5'
30714 5' -61 NC_006552.1 + 19897 0.68 0.343037
Target:  5'- aUAgGCCAUgGCGUAguuggcccaugugcGGUACGCCUUGc -3'
miRNA:   3'- gAUgCGGUGgCGCGU--------------CCGUGCGGAGC- -5'
30714 5' -61 NC_006552.1 + 47600 0.68 0.337566
Target:  5'- aUGCGCUggGCgGCGCGGGuuuggaaacccCugGCCUCu -3'
miRNA:   3'- gAUGCGG--UGgCGCGUCC-----------GugCGGAGc -5'
30714 5' -61 NC_006552.1 + 31676 0.69 0.329861
Target:  5'- -aGCGCCuuGCUggaacugguGCGCAGGCGCGCagCGg -3'
miRNA:   3'- gaUGCGG--UGG---------CGCGUCCGUGCGgaGC- -5'
30714 5' -61 NC_006552.1 + 56784 0.69 0.329861
Target:  5'- aCUGCucgggGCUcagGCCGCGcCAGGCGCGCagcaguccCUCGg -3'
miRNA:   3'- -GAUG-----CGG---UGGCGC-GUCCGUGCG--------GAGC- -5'
30714 5' -61 NC_006552.1 + 26507 0.69 0.314843
Target:  5'- ---gGCUACCGCGCccuuGGUACG-CUCGa -3'
miRNA:   3'- gaugCGGUGGCGCGu---CCGUGCgGAGC- -5'
30714 5' -61 NC_006552.1 + 62464 0.69 0.31044
Target:  5'- -gGCGCCAUCGCGCgcuuugccccguuucAGGCugG-UUCGa -3'
miRNA:   3'- gaUGCGGUGGCGCG---------------UCCGugCgGAGC- -5'
30714 5' -61 NC_006552.1 + 4942 0.69 0.30753
Target:  5'- -aACGCgGCCGCGCgcGGGCuuuccCGCCgCGc -3'
miRNA:   3'- gaUGCGgUGGCGCG--UCCGu----GCGGaGC- -5'
30714 5' -61 NC_006552.1 + 423 0.69 0.300348
Target:  5'- -cGCGCCACCGaCGCccuGGGCAuccUGCCg-- -3'
miRNA:   3'- gaUGCGGUGGC-GCG---UCCGU---GCGGagc -5'
30714 5' -61 NC_006552.1 + 34007 0.7 0.286373
Target:  5'- -cACuCCugCGCGCAGGCGCucagaCCUUGa -3'
miRNA:   3'- gaUGcGGugGCGCGUCCGUGc----GGAGC- -5'
30714 5' -61 NC_006552.1 + 32435 0.7 0.27958
Target:  5'- -cGCGCCAggUCGC-CGGGCACGCUaCGc -3'
miRNA:   3'- gaUGCGGU--GGCGcGUCCGUGCGGaGC- -5'
30714 5' -61 NC_006552.1 + 43215 0.7 0.272916
Target:  5'- gUACGCgACCGUGCAGcGCcccaguCGCCUg- -3'
miRNA:   3'- gAUGCGgUGGCGCGUC-CGu-----GCGGAgc -5'
30714 5' -61 NC_006552.1 + 54441 0.7 0.26638
Target:  5'- aUGCGCUGCUGCGCggugcucaGGGCAUGCagaUUGg -3'
miRNA:   3'- gAUGCGGUGGCGCG--------UCCGUGCGg--AGC- -5'
30714 5' -61 NC_006552.1 + 12721 0.7 0.26638
Target:  5'- -aACGCCAgCGCGUGGGCAa-CCUgCGg -3'
miRNA:   3'- gaUGCGGUgGCGCGUCCGUgcGGA-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.