miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30714 5' -61 NC_006552.1 + 15616 0.67 0.386504
Target:  5'- -aGCGCCacaACCGCGCAGcGUucaacuGCGCC-Ca -3'
miRNA:   3'- gaUGCGG---UGGCGCGUC-CG------UGCGGaGc -5'
30714 5' -61 NC_006552.1 + 13230 0.67 0.386504
Target:  5'- -aACGCCAaCGCGaagaacuGGCACGCCa-- -3'
miRNA:   3'- gaUGCGGUgGCGCgu-----CCGUGCGGagc -5'
30714 5' -61 NC_006552.1 + 12312 0.67 0.386504
Target:  5'- gUACGCCAUCGCuaccGCAaGCACcCCUCc -3'
miRNA:   3'- gAUGCGGUGGCG----CGUcCGUGcGGAGc -5'
30714 5' -61 NC_006552.1 + 108 0.67 0.384799
Target:  5'- -gACGCCGCCgGCGCcGGCAaacgaagcgggaGCCcCGg -3'
miRNA:   3'- gaUGCGGUGG-CGCGuCCGUg-----------CGGaGC- -5'
30714 5' -61 NC_006552.1 + 3218 0.68 0.369681
Target:  5'- aUGCGCCGCUGUGCAGcaGCGagGCCg-- -3'
miRNA:   3'- gAUGCGGUGGCGCGUC--CGUg-CGGagc -5'
30714 5' -61 NC_006552.1 + 46201 0.68 0.369681
Target:  5'- aCUACGCCACCGUcgGCAaaaaacaucuccGGCuuGCCg-- -3'
miRNA:   3'- -GAUGCGGUGGCG--CGU------------CCGugCGGagc -5'
30714 5' -61 NC_006552.1 + 59536 0.68 0.369681
Target:  5'- -aACGCCcCCGgauggccucgaUGCGGGCAgCGCuCUCGg -3'
miRNA:   3'- gaUGCGGuGGC-----------GCGUCCGU-GCG-GAGC- -5'
30714 5' -61 NC_006552.1 + 32854 0.68 0.361459
Target:  5'- ---aGCCuGCCGCGCAcGGCG-GCUUCGc -3'
miRNA:   3'- gaugCGG-UGGCGCGU-CCGUgCGGAGC- -5'
30714 5' -61 NC_006552.1 + 50094 0.68 0.361459
Target:  5'- gCUGCGgCuuCGC-CAGGUuCGCCUCGa -3'
miRNA:   3'- -GAUGCgGugGCGcGUCCGuGCGGAGC- -5'
30714 5' -61 NC_006552.1 + 37038 0.68 0.353366
Target:  5'- -gGCGCCACCGgacgccauUGCAGGCGCacgaagGCCgaacCGa -3'
miRNA:   3'- gaUGCGGUGGC--------GCGUCCGUG------CGGa---GC- -5'
30714 5' -61 NC_006552.1 + 11767 0.68 0.353366
Target:  5'- gCUAuCGCUcCCGCGCacAGGuCGCGCUUCc -3'
miRNA:   3'- -GAU-GCGGuGGCGCG--UCC-GUGCGGAGc -5'
30714 5' -61 NC_006552.1 + 59955 0.68 0.353366
Target:  5'- uUGCGCCACUucaGCAGGUcgucgcACGCCUg- -3'
miRNA:   3'- gAUGCGGUGGcg-CGUCCG------UGCGGAgc -5'
30714 5' -61 NC_006552.1 + 19897 0.68 0.343037
Target:  5'- aUAgGCCAUgGCGUAguuggcccaugugcGGUACGCCUUGc -3'
miRNA:   3'- gAUgCGGUGgCGCGU--------------CCGUGCGGAGC- -5'
30714 5' -61 NC_006552.1 + 47600 0.68 0.337566
Target:  5'- aUGCGCUggGCgGCGCGGGuuuggaaacccCugGCCUCu -3'
miRNA:   3'- gAUGCGG--UGgCGCGUCC-----------GugCGGAGc -5'
30714 5' -61 NC_006552.1 + 31676 0.69 0.329861
Target:  5'- -aGCGCCuuGCUggaacugguGCGCAGGCGCGCagCGg -3'
miRNA:   3'- gaUGCGG--UGG---------CGCGUCCGUGCGgaGC- -5'
30714 5' -61 NC_006552.1 + 56784 0.69 0.329861
Target:  5'- aCUGCucgggGCUcagGCCGCGcCAGGCGCGCagcaguccCUCGg -3'
miRNA:   3'- -GAUG-----CGG---UGGCGC-GUCCGUGCG--------GAGC- -5'
30714 5' -61 NC_006552.1 + 26507 0.69 0.314843
Target:  5'- ---gGCUACCGCGCccuuGGUACG-CUCGa -3'
miRNA:   3'- gaugCGGUGGCGCGu---CCGUGCgGAGC- -5'
30714 5' -61 NC_006552.1 + 62464 0.69 0.31044
Target:  5'- -gGCGCCAUCGCGCgcuuugccccguuucAGGCugG-UUCGa -3'
miRNA:   3'- gaUGCGGUGGCGCG---------------UCCGugCgGAGC- -5'
30714 5' -61 NC_006552.1 + 4942 0.69 0.30753
Target:  5'- -aACGCgGCCGCGCgcGGGCuuuccCGCCgCGc -3'
miRNA:   3'- gaUGCGgUGGCGCG--UCCGu----GCGGaGC- -5'
30714 5' -61 NC_006552.1 + 423 0.69 0.300348
Target:  5'- -cGCGCCACCGaCGCccuGGGCAuccUGCCg-- -3'
miRNA:   3'- gaUGCGGUGGC-GCG---UCCGU---GCGGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.