Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30718 | 3' | -58.8 | NC_006552.1 | + | 64012 | 0.66 | 0.564242 |
Target: 5'- cGGCAcaccGCUUcgugACGCGCCUGCAucGGUagagcaGGCa -3' miRNA: 3'- uCCGU----CGGA----UGCGUGGGCGU--UCA------CCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 62753 | 0.68 | 0.423323 |
Target: 5'- aGGGCGGgCgCUGcCGCGCCUGCGAGcgacgccUGGa -3' miRNA: 3'- -UCCGUC-G-GAU-GCGUGGGCGUUC-------ACCg -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 61188 | 0.66 | 0.543231 |
Target: 5'- cGGCaAGCCUGCGCcgauAUCgGCugcuGG-GGCg -3' miRNA: 3'- uCCG-UCGGAUGCG----UGGgCGu---UCaCCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 60707 | 0.67 | 0.502047 |
Target: 5'- aAGGUAGgaagACGguCACCCGCcGAGUGGUg -3' miRNA: 3'- -UCCGUCgga-UGC--GUGGGCG-UUCACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 58914 | 0.66 | 0.53282 |
Target: 5'- cGGGCAGCCaGCaGCGCCuUGUAAc-GGCc -3' miRNA: 3'- -UCCGUCGGaUG-CGUGG-GCGUUcaCCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 58432 | 0.68 | 0.451647 |
Target: 5'- cAGGCcucgaucAGCCgcUugGCACCgucguCGCAGGcGGCg -3' miRNA: 3'- -UCCG-------UCGG--AugCGUGG-----GCGUUCaCCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 58201 | 0.66 | 0.53282 |
Target: 5'- uGGCcgaAGCC-ACGCugCgC-CGGGUGGCu -3' miRNA: 3'- uCCG---UCGGaUGCGugG-GcGUUCACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 56326 | 0.66 | 0.522482 |
Target: 5'- aAGGCuacauCCaGCGUgACCCGaAAGUGGCg -3' miRNA: 3'- -UCCGuc---GGaUGCG-UGGGCgUUCACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 56226 | 0.68 | 0.42425 |
Target: 5'- uGGGCGGagaaaggCUACGCACCCaccgucGCAGaacUGGCa -3' miRNA: 3'- -UCCGUCg------GAUGCGUGGG------CGUUc--ACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 53876 | 1 | 0.002494 |
Target: 5'- aAGGCAGCCUACGCA-CCGCAAGUGGCa -3' miRNA: 3'- -UCCGUCGGAUGCGUgGGCGUUCACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 52115 | 0.67 | 0.472078 |
Target: 5'- aAGGCAGCagagcccaGCGCuACCC---AGUGGCg -3' miRNA: 3'- -UCCGUCGga------UGCG-UGGGcguUCACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 48506 | 0.69 | 0.39698 |
Target: 5'- cGGCcugAGCCcGCGCGCCCaGCAuccugaacGGaGGCa -3' miRNA: 3'- uCCG---UCGGaUGCGUGGG-CGU--------UCaCCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 47863 | 0.69 | 0.354117 |
Target: 5'- aAGGCAaguuCCUGCGCACCaucaaCAAG-GGCa -3' miRNA: 3'- -UCCGUc---GGAUGCGUGGgc---GUUCaCCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 45060 | 0.69 | 0.388144 |
Target: 5'- uGGCGuGCCUGCGU-UCCGguGGUcgGGCg -3' miRNA: 3'- uCCGU-CGGAUGCGuGGGCguUCA--CCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 44563 | 0.66 | 0.553707 |
Target: 5'- cGGGCAgcGCCUGCuGC-CUgGCAcgAGUGaGCa -3' miRNA: 3'- -UCCGU--CGGAUG-CGuGGgCGU--UCAC-CG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 44182 | 0.7 | 0.327669 |
Target: 5'- cGGCGcGCCgacgguccaugucuuCGCGCUcguggCGCAGGUGGCg -3' miRNA: 3'- uCCGU-CGGau-------------GCGUGG-----GCGUUCACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 40577 | 0.68 | 0.44304 |
Target: 5'- uGGUGGCC-ACGUACCaCGCAcGcUGGUc -3' miRNA: 3'- uCCGUCGGaUGCGUGG-GCGUuC-ACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 39776 | 0.79 | 0.075169 |
Target: 5'- cGGuCAGCg-GCGUgucGCCCGCAGGUGGCa -3' miRNA: 3'- uCC-GUCGgaUGCG---UGGGCGUUCACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 39272 | 0.66 | 0.53282 |
Target: 5'- cAGGUgacAGCCaGCGCugCCggcGCAGGaagcGGCa -3' miRNA: 3'- -UCCG---UCGGaUGCGugGG---CGUUCa---CCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 38502 | 0.71 | 0.278557 |
Target: 5'- cGGCcgugauguuGCUUACGCGCUCGauGGUGGCg -3' miRNA: 3'- uCCGu--------CGGAUGCGUGGGCguUCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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