miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30718 3' -58.8 NC_006552.1 + 2051 0.67 0.472078
Target:  5'- cAGGC-GCUUgaGCGCGCCgGCGucGUGcGCg -3'
miRNA:   3'- -UCCGuCGGA--UGCGUGGgCGUu-CAC-CG- -5'
30718 3' -58.8 NC_006552.1 + 4815 0.67 0.48197
Target:  5'- cGGgGGCgaUGCGCACgCGCAcAG-GGCg -3'
miRNA:   3'- uCCgUCGg-AUGCGUGgGCGU-UCaCCG- -5'
30718 3' -58.8 NC_006552.1 + 5116 0.7 0.337911
Target:  5'- cGGGCGGUCauUGCgGCACCUGCAc--GGCg -3'
miRNA:   3'- -UCCGUCGG--AUG-CGUGGGCGUucaCCG- -5'
30718 3' -58.8 NC_006552.1 + 5799 0.8 0.073089
Target:  5'- aAGcCAGCCcaACGCGCCCGCAAG-GGCg -3'
miRNA:   3'- -UCcGUCGGa-UGCGUGGGCGUUCaCCG- -5'
30718 3' -58.8 NC_006552.1 + 6647 0.67 0.502047
Target:  5'- cAGGCAGCCcggACaC-CCCGCGaucaaugaAGUcGGCa -3'
miRNA:   3'- -UCCGUCGGa--UGcGuGGGCGU--------UCA-CCG- -5'
30718 3' -58.8 NC_006552.1 + 10466 0.66 0.564242
Target:  5'- cAGGCgAGCCaGCGCAgugCCGCcuucUGGCa -3'
miRNA:   3'- -UCCG-UCGGaUGCGUg--GGCGuuc-ACCG- -5'
30718 3' -58.8 NC_006552.1 + 14986 0.7 0.337911
Target:  5'- --cCAGCUUGCGCugUUGUcGGUGGCg -3'
miRNA:   3'- uccGUCGGAUGCGugGGCGuUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 15977 0.66 0.564242
Target:  5'- cGGCAGCCUgcuggaGCGCGgCCUGCugcaccaacUGGUc -3'
miRNA:   3'- uCCGUCGGA------UGCGU-GGGCGuuc------ACCG- -5'
30718 3' -58.8 NC_006552.1 + 16033 0.68 0.433585
Target:  5'- --aCGGCCUGCGCAgCaGCAccagaaAGUGGCc -3'
miRNA:   3'- uccGUCGGAUGCGUgGgCGU------UCACCG- -5'
30718 3' -58.8 NC_006552.1 + 19953 0.7 0.314626
Target:  5'- aGGcGCGGCCUGCGCAucgagcacgUCCGCcu-UGGCc -3'
miRNA:   3'- -UC-CGUCGGAUGCGU---------GGGCGuucACCG- -5'
30718 3' -58.8 NC_006552.1 + 20600 0.74 0.180296
Target:  5'- cGGGCGGCCcaagUAucgaccgccuccUGCACCgCGCGGGUGGUu -3'
miRNA:   3'- -UCCGUCGG----AU------------GCGUGG-GCGUUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 21500 0.73 0.195071
Target:  5'- cGGGUAGCUguaggucgcUGCGCugCCGCuuugcguGGUGGUc -3'
miRNA:   3'- -UCCGUCGG---------AUGCGugGGCGu------UCACCG- -5'
30718 3' -58.8 NC_006552.1 + 22216 0.73 0.195071
Target:  5'- aAGGguGCCggugACGCgAUCCGCugccGUGGCc -3'
miRNA:   3'- -UCCguCGGa---UGCG-UGGGCGuu--CACCG- -5'
30718 3' -58.8 NC_006552.1 + 26095 0.67 0.491961
Target:  5'- gGGGCaucugcacgaAGCCguaGCGCucauCgUGCAGGUGGUa -3'
miRNA:   3'- -UCCG----------UCGGa--UGCGu---GgGCGUUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 26555 0.75 0.153698
Target:  5'- cAGGCgcucGGCCUGCGCGCCauCGUAGGUGa- -3'
miRNA:   3'- -UCCG----UCGGAUGCGUGG--GCGUUCACcg -5'
30718 3' -58.8 NC_006552.1 + 28647 0.66 0.564242
Target:  5'- cGGCGGCCgUAgGCAaucauggCUGCA-GUGGUg -3'
miRNA:   3'- uCCGUCGG-AUgCGUg------GGCGUuCACCG- -5'
30718 3' -58.8 NC_006552.1 + 28685 0.66 0.552656
Target:  5'- cGGCGGCgCcACGcCGCCUGgCAAGaucggccUGGCa -3'
miRNA:   3'- uCCGUCG-GaUGC-GUGGGC-GUUC-------ACCG- -5'
30718 3' -58.8 NC_006552.1 + 32355 0.66 0.543231
Target:  5'- cGGCGGCUU-CGCGCaCUGCGucguugagccAGUcGGCc -3'
miRNA:   3'- uCCGUCGGAuGCGUG-GGCGU----------UCA-CCG- -5'
30718 3' -58.8 NC_006552.1 + 32662 0.67 0.462289
Target:  5'- uGGGCcugcugAGCCUGCGCgaucACCUGCu--UGGUg -3'
miRNA:   3'- -UCCG------UCGGAUGCG----UGGGCGuucACCG- -5'
30718 3' -58.8 NC_006552.1 + 32774 0.68 0.452608
Target:  5'- cGGGCAcgCUACGCACCUGCccuugGGUg -3'
miRNA:   3'- -UCCGUcgGAUGCGUGGGCGuuca-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.