miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30718 3' -58.8 NC_006552.1 + 34521 0.66 0.543231
Target:  5'- cGGCAGCUcgaucUGguCCaUGUAGGUGGCg -3'
miRNA:   3'- uCCGUCGGau---GCguGG-GCGUUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 35833 0.67 0.48197
Target:  5'- uGGCAGCCUGaGC-CgCCGCcAGUuGGUu -3'
miRNA:   3'- uCCGUCGGAUgCGuG-GGCGuUCA-CCG- -5'
30718 3' -58.8 NC_006552.1 + 36955 0.66 0.564242
Target:  5'- cAGuCGGCUcagGCGCACgCuCAGGUGGCu -3'
miRNA:   3'- -UCcGUCGGa--UGCGUGgGcGUUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 38502 0.71 0.278557
Target:  5'- cGGCcgugauguuGCUUACGCGCUCGauGGUGGCg -3'
miRNA:   3'- uCCGu--------CGGAUGCGUGGGCguUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 39272 0.66 0.53282
Target:  5'- cAGGUgacAGCCaGCGCugCCggcGCAGGaagcGGCa -3'
miRNA:   3'- -UCCG---UCGGaUGCGugGG---CGUUCa---CCG- -5'
30718 3' -58.8 NC_006552.1 + 39776 0.79 0.075169
Target:  5'- cGGuCAGCg-GCGUgucGCCCGCAGGUGGCa -3'
miRNA:   3'- uCC-GUCGgaUGCG---UGGGCGUUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 40577 0.68 0.44304
Target:  5'- uGGUGGCC-ACGUACCaCGCAcGcUGGUc -3'
miRNA:   3'- uCCGUCGGaUGCGUGG-GCGUuC-ACCG- -5'
30718 3' -58.8 NC_006552.1 + 44182 0.7 0.327669
Target:  5'- cGGCGcGCCgacgguccaugucuuCGCGCUcguggCGCAGGUGGCg -3'
miRNA:   3'- uCCGU-CGGau-------------GCGUGG-----GCGUUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 44563 0.66 0.553707
Target:  5'- cGGGCAgcGCCUGCuGC-CUgGCAcgAGUGaGCa -3'
miRNA:   3'- -UCCGU--CGGAUG-CGuGGgCGU--UCAC-CG- -5'
30718 3' -58.8 NC_006552.1 + 45060 0.69 0.388144
Target:  5'- uGGCGuGCCUGCGU-UCCGguGGUcgGGCg -3'
miRNA:   3'- uCCGU-CGGAUGCGuGGGCguUCA--CCG- -5'
30718 3' -58.8 NC_006552.1 + 47863 0.69 0.354117
Target:  5'- aAGGCAaguuCCUGCGCACCaucaaCAAG-GGCa -3'
miRNA:   3'- -UCCGUc---GGAUGCGUGGgc---GUUCaCCG- -5'
30718 3' -58.8 NC_006552.1 + 48506 0.69 0.39698
Target:  5'- cGGCcugAGCCcGCGCGCCCaGCAuccugaacGGaGGCa -3'
miRNA:   3'- uCCG---UCGGaUGCGUGGG-CGU--------UCaCCG- -5'
30718 3' -58.8 NC_006552.1 + 52115 0.67 0.472078
Target:  5'- aAGGCAGCagagcccaGCGCuACCC---AGUGGCg -3'
miRNA:   3'- -UCCGUCGga------UGCG-UGGGcguUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 53876 1 0.002494
Target:  5'- aAGGCAGCCUACGCA-CCGCAAGUGGCa -3'
miRNA:   3'- -UCCGUCGGAUGCGUgGGCGUUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 56226 0.68 0.42425
Target:  5'- uGGGCGGagaaaggCUACGCACCCaccgucGCAGaacUGGCa -3'
miRNA:   3'- -UCCGUCg------GAUGCGUGGG------CGUUc--ACCG- -5'
30718 3' -58.8 NC_006552.1 + 56326 0.66 0.522482
Target:  5'- aAGGCuacauCCaGCGUgACCCGaAAGUGGCg -3'
miRNA:   3'- -UCCGuc---GGaUGCG-UGGGCgUUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 58201 0.66 0.53282
Target:  5'- uGGCcgaAGCC-ACGCugCgC-CGGGUGGCu -3'
miRNA:   3'- uCCG---UCGGaUGCGugG-GcGUUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 58432 0.68 0.451647
Target:  5'- cAGGCcucgaucAGCCgcUugGCACCgucguCGCAGGcGGCg -3'
miRNA:   3'- -UCCG-------UCGG--AugCGUGG-----GCGUUCaCCG- -5'
30718 3' -58.8 NC_006552.1 + 58914 0.66 0.53282
Target:  5'- cGGGCAGCCaGCaGCGCCuUGUAAc-GGCc -3'
miRNA:   3'- -UCCGUCGGaUG-CGUGG-GCGUUcaCCG- -5'
30718 3' -58.8 NC_006552.1 + 60707 0.67 0.502047
Target:  5'- aAGGUAGgaagACGguCACCCGCcGAGUGGUg -3'
miRNA:   3'- -UCCGUCgga-UGC--GUGGGCG-UUCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.