miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30721 3' -54 NC_006552.1 + 39652 0.66 0.842829
Target:  5'- uGCuGGCGaCGCAGCAacUCGGUaUCGAg- -3'
miRNA:   3'- gCG-CCGC-GUGUUGU--AGUCGaAGCUgc -5'
30721 3' -54 NC_006552.1 + 61897 0.7 0.584883
Target:  5'- uGCGGaCGCuuccucACAgaGCAUCAGCgcuUCGAUGa -3'
miRNA:   3'- gCGCC-GCG------UGU--UGUAGUCGa--AGCUGC- -5'
30721 3' -54 NC_006552.1 + 27754 0.7 0.595765
Target:  5'- uGCGGCGUgaGACG-CGGCUUgGAUGg -3'
miRNA:   3'- gCGCCGCGugUUGUaGUCGAAgCUGC- -5'
30721 3' -54 NC_006552.1 + 38299 0.69 0.650452
Target:  5'- gGCGGU-CACGGCAUCGcCUUCGAUc -3'
miRNA:   3'- gCGCCGcGUGUUGUAGUcGAAGCUGc -5'
30721 3' -54 NC_006552.1 + 59400 0.69 0.650452
Target:  5'- --gGGCGCgGCAGCGUCAgGCggUGGCGg -3'
miRNA:   3'- gcgCCGCG-UGUUGUAGU-CGaaGCUGC- -5'
30721 3' -54 NC_006552.1 + 4839 0.69 0.661379
Target:  5'- gGCGGuCGCGCAGCucacCAGCaa-GGCGa -3'
miRNA:   3'- gCGCC-GCGUGUUGua--GUCGaagCUGC- -5'
30721 3' -54 NC_006552.1 + 63788 0.69 0.672278
Target:  5'- cCGCGGaCGC-CAucaccgguGCGcUAGCUUCGGCGc -3'
miRNA:   3'- -GCGCC-GCGuGU--------UGUaGUCGAAGCUGC- -5'
30721 3' -54 NC_006552.1 + 26532 0.68 0.736508
Target:  5'- gGCGGCGCcggggugucCAGCGUCAGgCgcUCGGCc -3'
miRNA:   3'- gCGCCGCGu--------GUUGUAGUC-Ga-AGCUGc -5'
30721 3' -54 NC_006552.1 + 43547 0.68 0.736508
Target:  5'- gCGCGGCGUccCGAa--CAGCuUUCGACGc -3'
miRNA:   3'- -GCGCCGCGu-GUUguaGUCG-AAGCUGC- -5'
30721 3' -54 NC_006552.1 + 10848 0.71 0.541826
Target:  5'- uGCGGCGCugcCGACucuUCGGCUgcCGGCu -3'
miRNA:   3'- gCGCCGCGu--GUUGu--AGUCGAa-GCUGc -5'
30721 3' -54 NC_006552.1 + 20104 0.71 0.518587
Target:  5'- -uCGGCGCGCAcggaugcccccuGCAUCAGCgccuuguagaccUCGACGc -3'
miRNA:   3'- gcGCCGCGUGU------------UGUAGUCGa-----------AGCUGC- -5'
30721 3' -54 NC_006552.1 + 34256 0.71 0.516494
Target:  5'- aCGCGGCGCAguacuugaugguguCGcccgcguagaagcGgAUCGGCUUCGGCa -3'
miRNA:   3'- -GCGCCGCGU--------------GU-------------UgUAGUCGAAGCUGc -5'
30721 3' -54 NC_006552.1 + 4738 0.77 0.240709
Target:  5'- gGCGGCGUcuccuGCAcCAGCUUCGGCGg -3'
miRNA:   3'- gCGCCGCGugu--UGUaGUCGAAGCUGC- -5'
30721 3' -54 NC_006552.1 + 12368 0.77 0.253427
Target:  5'- uCGCGGCGCGCuucuGCAaCGGCcugcgcgUCGGCGg -3'
miRNA:   3'- -GCGCCGCGUGu---UGUaGUCGa------AGCUGC- -5'
30721 3' -54 NC_006552.1 + 25075 0.75 0.317538
Target:  5'- gCGCGGCGaau-ACAUCGGCUUaGACGg -3'
miRNA:   3'- -GCGCCGCguguUGUAGUCGAAgCUGC- -5'
30721 3' -54 NC_006552.1 + 61117 0.75 0.341463
Target:  5'- aGCGGCuGCAgGACAUCAGCgaagagcaGGCGu -3'
miRNA:   3'- gCGCCG-CGUgUUGUAGUCGaag-----CUGC- -5'
30721 3' -54 NC_006552.1 + 32307 0.75 0.349723
Target:  5'- uGCGGCaCACGGCGUCGGCcuggcucUCGugGa -3'
miRNA:   3'- gCGCCGcGUGUUGUAGUCGa------AGCugC- -5'
30721 3' -54 NC_006552.1 + 25222 0.72 0.459422
Target:  5'- gCGCGGCGCcguUGACGUUgAGCUgCGACGc -3'
miRNA:   3'- -GCGCCGCGu--GUUGUAG-UCGAaGCUGC- -5'
30721 3' -54 NC_006552.1 + 40748 0.72 0.489606
Target:  5'- uGCGGUagucaCGCGGCGUCAGCUUCuuGCGg -3'
miRNA:   3'- gCGCCGc----GUGUUGUAGUCGAAGc-UGC- -5'
30721 3' -54 NC_006552.1 + 18879 0.72 0.510234
Target:  5'- uGaCGGUGCACAGCGagagccugcugcUCGGCaUCGAUGu -3'
miRNA:   3'- gC-GCCGCGUGUUGU------------AGUCGaAGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.