miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30721 3' -54 NC_006552.1 + 2700 0.67 0.787278
Target:  5'- aGUGGCGCAuggacgcuucuuCAGCG-CAGCUU-GGCGc -3'
miRNA:   3'- gCGCCGCGU------------GUUGUaGUCGAAgCUGC- -5'
30721 3' -54 NC_006552.1 + 4254 0.67 0.777399
Target:  5'- gGCaGGCGCAUAGuuUCccGCUUUGGCGg -3'
miRNA:   3'- gCG-CCGCGUGUUguAGu-CGAAGCUGC- -5'
30721 3' -54 NC_006552.1 + 4738 0.77 0.240709
Target:  5'- gGCGGCGUcuccuGCAcCAGCUUCGGCGg -3'
miRNA:   3'- gCGCCGCGugu--UGUaGUCGAAGCUGC- -5'
30721 3' -54 NC_006552.1 + 4839 0.69 0.661379
Target:  5'- gGCGGuCGCGCAGCucacCAGCaa-GGCGa -3'
miRNA:   3'- gCGCC-GCGUGUUGua--GUCGaagCUGC- -5'
30721 3' -54 NC_006552.1 + 5677 0.66 0.806545
Target:  5'- uCGauGCGgGCAGCGcucUCGGCUgauucgCGGCGg -3'
miRNA:   3'- -GCgcCGCgUGUUGU---AGUCGAa-----GCUGC- -5'
30721 3' -54 NC_006552.1 + 8506 0.67 0.787278
Target:  5'- aCGCauGGCGCGCu-CAgcCAGCgaaUCGACGc -3'
miRNA:   3'- -GCG--CCGCGUGuuGUa-GUCGa--AGCUGC- -5'
30721 3' -54 NC_006552.1 + 9408 0.67 0.746915
Target:  5'- uGCGGCGCGCuuCAUgcCAGCcaUCG-CGu -3'
miRNA:   3'- gCGCCGCGUGuuGUA--GUCGa-AGCuGC- -5'
30721 3' -54 NC_006552.1 + 9727 0.66 0.806545
Target:  5'- aCGCuGGCGCGauuCAUCAGCa-UGGCGc -3'
miRNA:   3'- -GCG-CCGCGUguuGUAGUCGaaGCUGC- -5'
30721 3' -54 NC_006552.1 + 10701 0.67 0.796996
Target:  5'- cCGCGGUGC-CAGC--CGGUaucUCGACGa -3'
miRNA:   3'- -GCGCCGCGuGUUGuaGUCGa--AGCUGC- -5'
30721 3' -54 NC_006552.1 + 10848 0.71 0.541826
Target:  5'- uGCGGCGCugcCGACucuUCGGCUgcCGGCu -3'
miRNA:   3'- gCGCCGCGu--GUUGu--AGUCGAa-GCUGc -5'
30721 3' -54 NC_006552.1 + 12368 0.77 0.253427
Target:  5'- uCGCGGCGCGCuucuGCAaCGGCcugcgcgUCGGCGg -3'
miRNA:   3'- -GCGCCGCGUGu---UGUaGUCGa------AGCUGC- -5'
30721 3' -54 NC_006552.1 + 14739 0.66 0.806545
Target:  5'- cCGCGGUGCuCGGCcuugaucugCGGCaugUCGGCGc -3'
miRNA:   3'- -GCGCCGCGuGUUGua-------GUCGa--AGCUGC- -5'
30721 3' -54 NC_006552.1 + 18879 0.72 0.510234
Target:  5'- uGaCGGUGCACAGCGagagccugcugcUCGGCaUCGAUGu -3'
miRNA:   3'- gC-GCCGCGUGUUGU------------AGUCGaAGCUGC- -5'
30721 3' -54 NC_006552.1 + 19644 0.66 0.825088
Target:  5'- uCGCGGUGUACucGCugAUCuGCauUUCGGCGu -3'
miRNA:   3'- -GCGCCGCGUGu-UG--UAGuCG--AAGCUGC- -5'
30721 3' -54 NC_006552.1 + 20104 0.71 0.518587
Target:  5'- -uCGGCGCGCAcggaugcccccuGCAUCAGCgccuuguagaccUCGACGc -3'
miRNA:   3'- gcGCCGCGUGU------------UGUAGUCGa-----------AGCUGC- -5'
30721 3' -54 NC_006552.1 + 25075 0.75 0.317538
Target:  5'- gCGCGGCGaau-ACAUCGGCUUaGACGg -3'
miRNA:   3'- -GCGCCGCguguUGUAGUCGAAgCUGC- -5'
30721 3' -54 NC_006552.1 + 25222 0.72 0.459422
Target:  5'- gCGCGGCGCcguUGACGUUgAGCUgCGACGc -3'
miRNA:   3'- -GCGCCGCGu--GUUGUAG-UCGAaGCUGC- -5'
30721 3' -54 NC_006552.1 + 26163 0.66 0.806545
Target:  5'- aCGuUGGCGCGCGcgAUCAGCa--GACGc -3'
miRNA:   3'- -GC-GCCGCGUGUugUAGUCGaagCUGC- -5'
30721 3' -54 NC_006552.1 + 26532 0.68 0.736508
Target:  5'- gGCGGCGCcggggugucCAGCGUCAGgCgcUCGGCc -3'
miRNA:   3'- gCGCCGCGu--------GUUGUAGUC-Ga-AGCUGc -5'
30721 3' -54 NC_006552.1 + 27754 0.7 0.595765
Target:  5'- uGCGGCGUgaGACG-CGGCUUgGAUGg -3'
miRNA:   3'- gCGCCGCGugUUGUaGUCGAAgCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.