Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30721 | 3' | -54 | NC_006552.1 | + | 27893 | 0.66 | 0.815912 |
Target: 5'- uGauGCGCAC--CGUCGGCUccUCGAUGu -3' miRNA: 3'- gCgcCGCGUGuuGUAGUCGA--AGCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 32307 | 0.75 | 0.349723 |
Target: 5'- uGCGGCaCACGGCGUCGGCcuggcucUCGugGa -3' miRNA: 3'- gCGCCGcGUGUUGUAGUCGa------AGCugC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 33540 | 0.66 | 0.806545 |
Target: 5'- gCGCaGGCGCGCAGCGgccgaCAGCagcaGGCc -3' miRNA: 3'- -GCG-CCGCGUGUUGUa----GUCGaag-CUGc -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 34256 | 0.71 | 0.516494 |
Target: 5'- aCGCGGCGCAguacuugaugguguCGcccgcguagaagcGgAUCGGCUUCGGCa -3' miRNA: 3'- -GCGCCGCGU--------------GU-------------UgUAGUCGAAGCUGc -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 37777 | 0.67 | 0.757207 |
Target: 5'- cCGCGcucuGCauCACAGCGUCGGCgaUCGGCGc -3' miRNA: 3'- -GCGC----CGc-GUGUUGUAGUCGa-AGCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 38299 | 0.69 | 0.650452 |
Target: 5'- gGCGGU-CACGGCAUCGcCUUCGAUc -3' miRNA: 3'- gCGCCGcGUGUUGUAGUcGAAGCUGc -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 39652 | 0.66 | 0.842829 |
Target: 5'- uGCuGGCGaCGCAGCAacUCGGUaUCGAg- -3' miRNA: 3'- gCG-CCGC-GUGUUGU--AGUCGaAGCUgc -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 40748 | 0.72 | 0.489606 |
Target: 5'- uGCGGUagucaCGCGGCGUCAGCUUCuuGCGg -3' miRNA: 3'- gCGCCGc----GUGUUGUAGUCGAAGc-UGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 43547 | 0.68 | 0.736508 |
Target: 5'- gCGCGGCGUccCGAa--CAGCuUUCGACGc -3' miRNA: 3'- -GCGCCGCGu-GUUguaGUCG-AAGCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 44179 | 0.67 | 0.777399 |
Target: 5'- cCGCGGCGCGcCGACGguccaugucuUCGcGC-UCGugGc -3' miRNA: 3'- -GCGCCGCGU-GUUGU----------AGU-CGaAGCugC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 49713 | 0.67 | 0.767372 |
Target: 5'- gCGCGGUGCugAugAUCgaggaaGGCaUUaCGGCGa -3' miRNA: 3'- -GCGCCGCGugUugUAG------UCG-AA-GCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 50102 | 0.66 | 0.815912 |
Target: 5'- gGCGGaaCGCGCAGCA-CGGCggCG-CGu -3' miRNA: 3'- gCGCC--GCGUGUUGUaGUCGaaGCuGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 50302 | 0.66 | 0.815912 |
Target: 5'- cCGCcgGGCGCuCAccgaaguuGCGUCGGCaaUCGGCGu -3' miRNA: 3'- -GCG--CCGCGuGU--------UGUAGUCGa-AGCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 53315 | 1.1 | 0.00155 |
Target: 5'- gCGCGGCGCACAACAUCAGCUUCGACGa -3' miRNA: 3'- -GCGCCGCGUGUUGUAGUCGAAGCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 59400 | 0.69 | 0.650452 |
Target: 5'- --gGGCGCgGCAGCGUCAgGCggUGGCGg -3' miRNA: 3'- gcgCCGCG-UGUUGUAGU-CGaaGCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 61117 | 0.75 | 0.341463 |
Target: 5'- aGCGGCuGCAgGACAUCAGCgaagagcaGGCGu -3' miRNA: 3'- gCGCCG-CGUgUUGUAGUCGaag-----CUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 61193 | 0.66 | 0.806545 |
Target: 5'- aGCcuGCGC-CGAUAUCGGCUgcuggggCGACa -3' miRNA: 3'- gCGc-CGCGuGUUGUAGUCGAa------GCUGc -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 61387 | 0.67 | 0.767372 |
Target: 5'- -uUGGCGCGcCGGCggCGGCUacaccacgaaccUCGACGa -3' miRNA: 3'- gcGCCGCGU-GUUGuaGUCGA------------AGCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 61897 | 0.7 | 0.584883 |
Target: 5'- uGCGGaCGCuuccucACAgaGCAUCAGCgcuUCGAUGa -3' miRNA: 3'- gCGCC-GCG------UGU--UGUAGUCGa--AGCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 63788 | 0.69 | 0.672278 |
Target: 5'- cCGCGGaCGC-CAucaccgguGCGcUAGCUUCGGCGc -3' miRNA: 3'- -GCGCC-GCGuGU--------UGUaGUCGAAGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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