Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30721 | 3' | -54 | NC_006552.1 | + | 64751 | 0.67 | 0.746915 |
Target: 5'- gGUGGCGCuCAACAUCGuccaacGCgccacCGACGc -3' miRNA: 3'- gCGCCGCGuGUUGUAGU------CGaa---GCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 43547 | 0.68 | 0.736508 |
Target: 5'- gCGCGGCGUccCGAa--CAGCuUUCGACGc -3' miRNA: 3'- -GCGCCGCGu-GUUguaGUCG-AAGCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 26532 | 0.68 | 0.736508 |
Target: 5'- gGCGGCGCcggggugucCAGCGUCAGgCgcUCGGCc -3' miRNA: 3'- gCGCCGCGu--------GUUGUAGUC-Ga-AGCUGc -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 63788 | 0.69 | 0.672278 |
Target: 5'- cCGCGGaCGC-CAucaccgguGCGcUAGCUUCGGCGc -3' miRNA: 3'- -GCGCC-GCGuGU--------UGUaGUCGAAGCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 4839 | 0.69 | 0.661379 |
Target: 5'- gGCGGuCGCGCAGCucacCAGCaa-GGCGa -3' miRNA: 3'- gCGCC-GCGUGUUGua--GUCGaagCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 38299 | 0.69 | 0.650452 |
Target: 5'- gGCGGU-CACGGCAUCGcCUUCGAUc -3' miRNA: 3'- gCGCCGcGUGUUGUAGUcGAAGCUGc -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 59400 | 0.69 | 0.650452 |
Target: 5'- --gGGCGCgGCAGCGUCAgGCggUGGCGg -3' miRNA: 3'- gcgCCGCG-UGUUGUAGU-CGaaGCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 27754 | 0.7 | 0.595765 |
Target: 5'- uGCGGCGUgaGACG-CGGCUUgGAUGg -3' miRNA: 3'- gCGCCGCGugUUGUaGUCGAAgCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 61897 | 0.7 | 0.584883 |
Target: 5'- uGCGGaCGCuuccucACAgaGCAUCAGCgcuUCGAUGa -3' miRNA: 3'- gCGCC-GCG------UGU--UGUAGUCGa--AGCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 10848 | 0.71 | 0.541826 |
Target: 5'- uGCGGCGCugcCGACucuUCGGCUgcCGGCu -3' miRNA: 3'- gCGCCGCGu--GUUGu--AGUCGAa-GCUGc -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 20104 | 0.71 | 0.518587 |
Target: 5'- -uCGGCGCGCAcggaugcccccuGCAUCAGCgccuuguagaccUCGACGc -3' miRNA: 3'- gcGCCGCGUGU------------UGUAGUCGa-----------AGCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 34256 | 0.71 | 0.516494 |
Target: 5'- aCGCGGCGCAguacuugaugguguCGcccgcguagaagcGgAUCGGCUUCGGCa -3' miRNA: 3'- -GCGCCGCGU--------------GU-------------UgUAGUCGAAGCUGc -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 18879 | 0.72 | 0.510234 |
Target: 5'- uGaCGGUGCACAGCGagagccugcugcUCGGCaUCGAUGu -3' miRNA: 3'- gC-GCCGCGUGUUGU------------AGUCGaAGCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 40748 | 0.72 | 0.489606 |
Target: 5'- uGCGGUagucaCGCGGCGUCAGCUUCuuGCGg -3' miRNA: 3'- gCGCCGc----GUGUUGUAGUCGAAGc-UGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 25222 | 0.72 | 0.459422 |
Target: 5'- gCGCGGCGCcguUGACGUUgAGCUgCGACGc -3' miRNA: 3'- -GCGCCGCGu--GUUGUAG-UCGAaGCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 32307 | 0.75 | 0.349723 |
Target: 5'- uGCGGCaCACGGCGUCGGCcuggcucUCGugGa -3' miRNA: 3'- gCGCCGcGUGUUGUAGUCGa------AGCugC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 61117 | 0.75 | 0.341463 |
Target: 5'- aGCGGCuGCAgGACAUCAGCgaagagcaGGCGu -3' miRNA: 3'- gCGCCG-CGUgUUGUAGUCGaag-----CUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 25075 | 0.75 | 0.317538 |
Target: 5'- gCGCGGCGaau-ACAUCGGCUUaGACGg -3' miRNA: 3'- -GCGCCGCguguUGUAGUCGAAgCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 12368 | 0.77 | 0.253427 |
Target: 5'- uCGCGGCGCGCuucuGCAaCGGCcugcgcgUCGGCGg -3' miRNA: 3'- -GCGCCGCGUGu---UGUaGUCGa------AGCUGC- -5' |
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30721 | 3' | -54 | NC_006552.1 | + | 4738 | 0.77 | 0.240709 |
Target: 5'- gGCGGCGUcuccuGCAcCAGCUUCGGCGg -3' miRNA: 3'- gCGCCGCGugu--UGUaGUCGAAGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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