Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30722 | 3' | -60.9 | NC_006552.1 | + | 2078 | 0.67 | 0.414383 |
Target: 5'- cGCGGCCUG-CUGaUCgaaCUCGaCGCCGg -3' miRNA: 3'- -CGCCGGACuGAUcGGug-GAGC-GCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 2645 | 0.68 | 0.371306 |
Target: 5'- gGCGGCCcuucugGGCUAGggACCgcgCGgCGCCGa -3' miRNA: 3'- -CGCCGGa-----CUGAUCggUGGa--GC-GCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 3574 | 0.71 | 0.231003 |
Target: 5'- -aGGUgCUGGCcgAGCCGCCg-GCGCCGg -3' miRNA: 3'- cgCCG-GACUGa-UCGGUGGagCGCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 4912 | 0.66 | 0.489268 |
Target: 5'- aGCGGCCUuAUUGagcGCUGCCuguuucaugUCGCGCUGc -3' miRNA: 3'- -CGCCGGAcUGAU---CGGUGG---------AGCGCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 6127 | 0.68 | 0.339112 |
Target: 5'- aUGGCCauUGGCUGGUCAgggUUGCGCCGa -3' miRNA: 3'- cGCCGG--ACUGAUCGGUgg-AGCGCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 7926 | 0.66 | 0.499079 |
Target: 5'- uCGGCCau-CUGGuUgGCCUCGCGCUu -3' miRNA: 3'- cGCCGGacuGAUC-GgUGGAGCGCGGc -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 8118 | 0.66 | 0.469922 |
Target: 5'- cCGGCCaUGcAUcAGCCAUCU-GCGCCa -3' miRNA: 3'- cGCCGG-AC-UGaUCGGUGGAgCGCGGc -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 8541 | 0.66 | 0.469922 |
Target: 5'- cCGGCUUG-CUGuCCACgUCGCGCg- -3' miRNA: 3'- cGCCGGACuGAUcGGUGgAGCGCGgc -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 9369 | 0.67 | 0.42336 |
Target: 5'- aCGGCUgaaUGcCUGGCCACUgcCGCGCaCGu -3' miRNA: 3'- cGCCGG---ACuGAUCGGUGGa-GCGCG-GC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 11437 | 0.67 | 0.405523 |
Target: 5'- cCGGCUcGGC-GGgCGCCUCGCGCa- -3' miRNA: 3'- cGCCGGaCUGaUCgGUGGAGCGCGgc -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 12334 | 0.66 | 0.441658 |
Target: 5'- gGCGGCgccCUGACUgcGGUCAuCCUCgaagGCGUCGc -3' miRNA: 3'- -CGCCG---GACUGA--UCGGU-GGAG----CGCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 13647 | 0.75 | 0.117788 |
Target: 5'- gGCGGCCUGGCgaucuGCCGCCUUuuccuCGUCGg -3' miRNA: 3'- -CGCCGGACUGau---CGGUGGAGc----GCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 13893 | 0.67 | 0.394186 |
Target: 5'- uGUGGCUUG-CUccacGGCCGCCUgcugagcaucggugCGUGCCa -3' miRNA: 3'- -CGCCGGACuGA----UCGGUGGA--------------GCGCGGc -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 15490 | 0.66 | 0.479547 |
Target: 5'- uGCGGCUUGc---GCCugCUgCGCGUCa -3' miRNA: 3'- -CGCCGGACugauCGGugGA-GCGCGGc -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 15993 | 0.7 | 0.27427 |
Target: 5'- cGCGGCCUGcugcaccaACUGGUCAgUU-GCGCCa -3' miRNA: 3'- -CGCCGGAC--------UGAUCGGUgGAgCGCGGc -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 16344 | 0.66 | 0.441658 |
Target: 5'- uGCGGCC-GGCUGaCCGCCaugcagaacCGCcGCCGg -3' miRNA: 3'- -CGCCGGaCUGAUcGGUGGa--------GCG-CGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 17901 | 0.68 | 0.369648 |
Target: 5'- gGCGGCCUGGCgaacgcuaucGGCCcgagagcuaucgggaACCacgguuacccgaggCGCGCCGa -3' miRNA: 3'- -CGCCGGACUGa---------UCGG---------------UGGa-------------GCGCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 18753 | 0.67 | 0.42336 |
Target: 5'- cCGGCCUGugcaaUGGCCugUUgcugcCGUGCCGc -3' miRNA: 3'- cGCCGGACug---AUCGGugGA-----GCGCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 19730 | 0.73 | 0.170285 |
Target: 5'- uCGGCCacguUGgcGCUGGCCGCUgCGCGCCa -3' miRNA: 3'- cGCCGG----AC--UGAUCGGUGGaGCGCGGc -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 19956 | 0.68 | 0.371306 |
Target: 5'- cGCGGCCUGcgcaucgagcACgu-CCGCCUUG-GCCGa -3' miRNA: 3'- -CGCCGGAC----------UGaucGGUGGAGCgCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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