miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30722 3' -60.9 NC_006552.1 + 21927 0.69 0.331386
Target:  5'- aCGGCCUGAUgcgcguccaCCACCUCGuCGCg- -3'
miRNA:   3'- cGCCGGACUGauc------GGUGGAGC-GCGgc -5'
30722 3' -60.9 NC_006552.1 + 22048 0.71 0.248799
Target:  5'- gGCGGCCUGGCcagugcuGUCGCUgaugCGCGCgGc -3'
miRNA:   3'- -CGCCGGACUGau-----CGGUGGa---GCGCGgC- -5'
30722 3' -60.9 NC_006552.1 + 23803 0.69 0.323791
Target:  5'- aCGcGCCUGACUuuguacaugauGGCCaACUcacgCGCGCCGc -3'
miRNA:   3'- cGC-CGGACUGA-----------UCGG-UGGa---GCGCGGC- -5'
30722 3' -60.9 NC_006552.1 + 27766 0.66 0.450974
Target:  5'- cGCGGCUuggaUGGCUGGaaCACUUCaGCGUCa -3'
miRNA:   3'- -CGCCGG----ACUGAUCg-GUGGAG-CGCGGc -5'
30722 3' -60.9 NC_006552.1 + 32321 0.74 0.138138
Target:  5'- uCGGCCUGGCUcucguggaucAGCCugC-CGCGCaCGg -3'
miRNA:   3'- cGCCGGACUGA----------UCGGugGaGCGCG-GC- -5'
30722 3' -60.9 NC_006552.1 + 33552 0.67 0.432452
Target:  5'- aGCGGCC-GAC-AGCagcagGCCa-GCGCCGa -3'
miRNA:   3'- -CGCCGGaCUGaUCGg----UGGagCGCGGC- -5'
30722 3' -60.9 NC_006552.1 + 35935 0.67 0.42336
Target:  5'- cGCGGCCUgGGCUugGGCCuuCCa-GUGCUGu -3'
miRNA:   3'- -CGCCGGA-CUGA--UCGGu-GGagCGCGGC- -5'
30722 3' -60.9 NC_006552.1 + 45384 0.71 0.236813
Target:  5'- cGCGGCCcgGGCU--CUugCUCGgCGCCGa -3'
miRNA:   3'- -CGCCGGa-CUGAucGGugGAGC-GCGGC- -5'
30722 3' -60.9 NC_006552.1 + 50425 0.73 0.174744
Target:  5'- gGCGGCCUGAUUGGCgGCCUCcucuuccUGCUc -3'
miRNA:   3'- -CGCCGGACUGAUCGgUGGAGc------GCGGc -5'
30722 3' -60.9 NC_006552.1 + 52309 1.11 0.000276
Target:  5'- aGCGGCCUGACUAGCCACCUCGCGCCGg -3'
miRNA:   3'- -CGCCGGACUGAUCGGUGGAGCGCGGC- -5'
30722 3' -60.9 NC_006552.1 + 54010 0.69 0.294714
Target:  5'- cUGGcCCUGGCcgcgAGCCGCCacCGCgGCCGa -3'
miRNA:   3'- cGCC-GGACUGa---UCGGUGGa-GCG-CGGC- -5'
30722 3' -60.9 NC_006552.1 + 56553 0.66 0.450974
Target:  5'- gGCGGCaagUGGCUGcucgccccGUggaucauccagCACCUCGCGCCc -3'
miRNA:   3'- -CGCCGg--ACUGAU--------CG-----------GUGGAGCGCGGc -5'
30722 3' -60.9 NC_006552.1 + 58195 0.69 0.301788
Target:  5'- -aGGcCCUGGCcgaAGCCACgCU-GCGCCGg -3'
miRNA:   3'- cgCC-GGACUGa--UCGGUG-GAgCGCGGC- -5'
30722 3' -60.9 NC_006552.1 + 58956 0.67 0.432452
Target:  5'- uGCGGCggaaCUGugUAggucGCCcCCUCGacgaGCCGa -3'
miRNA:   3'- -CGCCG----GACugAU----CGGuGGAGCg---CGGC- -5'
30722 3' -60.9 NC_006552.1 + 59885 0.68 0.363883
Target:  5'- -gGGCCUGACgaagccgaucaugugGGCaacguuCACCaaggCGCGCCGg -3'
miRNA:   3'- cgCCGGACUGa--------------UCG------GUGGa---GCGCGGC- -5'
30722 3' -60.9 NC_006552.1 + 60256 0.66 0.479547
Target:  5'- cGCGGCCgcgcgcgGGCUuucCCGCC--GCGCCa -3'
miRNA:   3'- -CGCCGGa------CUGAuc-GGUGGagCGCGGc -5'
30722 3' -60.9 NC_006552.1 + 61821 0.67 0.388167
Target:  5'- uCGGCCUGA--AGCUACC-CaaGCCGg -3'
miRNA:   3'- cGCCGGACUgaUCGGUGGaGcgCGGC- -5'
30722 3' -60.9 NC_006552.1 + 63463 0.71 0.224752
Target:  5'- -aGGCCUGugcaaaugcuuccGCUgccGGCCGCCg-GCGCCGg -3'
miRNA:   3'- cgCCGGAC-------------UGA---UCGGUGGagCGCGGC- -5'
30722 3' -60.9 NC_006552.1 + 63659 0.67 0.414383
Target:  5'- -aGaGCCUG-CUGGCCaugaucaaggACCagGCGCCGa -3'
miRNA:   3'- cgC-CGGACuGAUCGG----------UGGagCGCGGC- -5'
30722 3' -60.9 NC_006552.1 + 64003 0.72 0.208958
Target:  5'- -gGGCCUGGCcGGCaCACCgcuucgugaCGCGCCu -3'
miRNA:   3'- cgCCGGACUGaUCG-GUGGa--------GCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.