Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30722 | 3' | -60.9 | NC_006552.1 | + | 13893 | 0.67 | 0.394186 |
Target: 5'- uGUGGCUUG-CUccacGGCCGCCUgcugagcaucggugCGUGCCa -3' miRNA: 3'- -CGCCGGACuGA----UCGGUGGA--------------GCGCGGc -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 61821 | 0.67 | 0.388167 |
Target: 5'- uCGGCCUGA--AGCUACC-CaaGCCGg -3' miRNA: 3'- cGCCGGACUgaUCGGUGGaGcgCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 19956 | 0.68 | 0.371306 |
Target: 5'- cGCGGCCUGcgcaucgagcACgu-CCGCCUUG-GCCGa -3' miRNA: 3'- -CGCCGGAC----------UGaucGGUGGAGCgCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 2645 | 0.68 | 0.371306 |
Target: 5'- gGCGGCCcuucugGGCUAGggACCgcgCGgCGCCGa -3' miRNA: 3'- -CGCCGGa-----CUGAUCggUGGa--GC-GCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 17901 | 0.68 | 0.369648 |
Target: 5'- gGCGGCCUGGCgaacgcuaucGGCCcgagagcuaucgggaACCacgguuacccgaggCGCGCCGa -3' miRNA: 3'- -CGCCGGACUGa---------UCGG---------------UGGa-------------GCGCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 59885 | 0.68 | 0.363883 |
Target: 5'- -gGGCCUGACgaagccgaucaugugGGCaacguuCACCaaggCGCGCCGg -3' miRNA: 3'- cgCCGGACUGa--------------UCG------GUGGa---GCGCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 6127 | 0.68 | 0.339112 |
Target: 5'- aUGGCCauUGGCUGGUCAgggUUGCGCCGa -3' miRNA: 3'- cGCCGG--ACUGAUCGGUgg-AGCGCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 21927 | 0.69 | 0.331386 |
Target: 5'- aCGGCCUGAUgcgcguccaCCACCUCGuCGCg- -3' miRNA: 3'- cGCCGGACUGauc------GGUGGAGC-GCGgc -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 23803 | 0.69 | 0.323791 |
Target: 5'- aCGcGCCUGACUuuguacaugauGGCCaACUcacgCGCGCCGc -3' miRNA: 3'- cGC-CGGACUGA-----------UCGG-UGGa---GCGCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 58195 | 0.69 | 0.301788 |
Target: 5'- -aGGcCCUGGCcgaAGCCACgCU-GCGCCGg -3' miRNA: 3'- cgCC-GGACUGa--UCGGUG-GAgCGCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 54010 | 0.69 | 0.294714 |
Target: 5'- cUGGcCCUGGCcgcgAGCCGCCacCGCgGCCGa -3' miRNA: 3'- cGCC-GGACUGa---UCGGUGGa-GCG-CGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 15993 | 0.7 | 0.27427 |
Target: 5'- cGCGGCCUGcugcaccaACUGGUCAgUU-GCGCCa -3' miRNA: 3'- -CGCCGGAC--------UGAUCGGUgGAgCGCGGc -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 22048 | 0.71 | 0.248799 |
Target: 5'- gGCGGCCUGGCcagugcuGUCGCUgaugCGCGCgGc -3' miRNA: 3'- -CGCCGGACUGau-----CGGUGGa---GCGCGgC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 45384 | 0.71 | 0.236813 |
Target: 5'- cGCGGCCcgGGCU--CUugCUCGgCGCCGa -3' miRNA: 3'- -CGCCGGa-CUGAucGGugGAGC-GCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 3574 | 0.71 | 0.231003 |
Target: 5'- -aGGUgCUGGCcgAGCCGCCg-GCGCCGg -3' miRNA: 3'- cgCCG-GACUGa-UCGGUGGagCGCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 63463 | 0.71 | 0.224752 |
Target: 5'- -aGGCCUGugcaaaugcuuccGCUgccGGCCGCCg-GCGCCGg -3' miRNA: 3'- cgCCGGAC-------------UGA---UCGGUGGagCGCGGC- -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 64003 | 0.72 | 0.208958 |
Target: 5'- -gGGCCUGGCcGGCaCACCgcuucgugaCGCGCCu -3' miRNA: 3'- cgCCGGACUGaUCG-GUGGa--------GCGCGGc -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 50425 | 0.73 | 0.174744 |
Target: 5'- gGCGGCCUGAUUGGCgGCCUCcucuuccUGCUc -3' miRNA: 3'- -CGCCGGACUGAUCGgUGGAGc------GCGGc -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 19730 | 0.73 | 0.170285 |
Target: 5'- uCGGCCacguUGgcGCUGGCCGCUgCGCGCCa -3' miRNA: 3'- cGCCGG----AC--UGAUCGGUGGaGCGCGGc -5' |
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30722 | 3' | -60.9 | NC_006552.1 | + | 32321 | 0.74 | 0.138138 |
Target: 5'- uCGGCCUGGCUcucguggaucAGCCugC-CGCGCaCGg -3' miRNA: 3'- cGCCGGACUGA----------UCGGugGaGCGCG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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