miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30725 5' -52.6 NC_006552.1 + 12241 0.66 0.906052
Target:  5'- ---cCGCGCACGgcGCUCGGuguucugcuuccgcuCGCGAUUc -3'
miRNA:   3'- cgaaGCGCGUGU--UGAGCU---------------GCGCUAGc -5'
30725 5' -52.6 NC_006552.1 + 28414 0.66 0.903384
Target:  5'- uGCUgua-GCGCGGCUCGAUGCuGAUa- -3'
miRNA:   3'- -CGAagcgCGUGUUGAGCUGCG-CUAgc -5'
30725 5' -52.6 NC_006552.1 + 7067 0.66 0.889401
Target:  5'- cGCUUUgGCGaUGCGAUaCGACGCGAUg- -3'
miRNA:   3'- -CGAAG-CGC-GUGUUGaGCUGCGCUAgc -5'
30725 5' -52.6 NC_006552.1 + 20814 0.67 0.866495
Target:  5'- cGC-UCGCGUcCGGCggCGugGCG-UCGa -3'
miRNA:   3'- -CGaAGCGCGuGUUGa-GCugCGCuAGC- -5'
30725 5' -52.6 NC_006552.1 + 38258 0.67 0.850006
Target:  5'- uGCggaUCGCGCuGCGGCUCGuugagcaccacgACaCGAUCGg -3'
miRNA:   3'- -CGa--AGCGCG-UGUUGAGC------------UGcGCUAGC- -5'
30725 5' -52.6 NC_006552.1 + 49850 0.67 0.850006
Target:  5'- ---aUGCGCcacCGGCUCGACGCcgcGUCGg -3'
miRNA:   3'- cgaaGCGCGu--GUUGAGCUGCGc--UAGC- -5'
30725 5' -52.6 NC_006552.1 + 10200 0.68 0.823595
Target:  5'- uCUUCGgGCGCGAuauCUCGGCGCa---- -3'
miRNA:   3'- cGAAGCgCGUGUU---GAGCUGCGcuagc -5'
30725 5' -52.6 NC_006552.1 + 32431 0.68 0.814381
Target:  5'- -gUUCGCGUccguGCgAACUCGGCG-GAUCa -3'
miRNA:   3'- cgAAGCGCG----UG-UUGAGCUGCgCUAGc -5'
30725 5' -52.6 NC_006552.1 + 32359 0.69 0.785639
Target:  5'- gGCUUCGCGCACuGCgUCGuugaGCcaGUCGg -3'
miRNA:   3'- -CGAAGCGCGUGuUG-AGCug--CGc-UAGC- -5'
30725 5' -52.6 NC_006552.1 + 8226 0.69 0.785639
Target:  5'- cGCcgaaGCGCAgCAugUCGGCGCGggCc -3'
miRNA:   3'- -CGaag-CGCGU-GUugAGCUGCGCuaGc -5'
30725 5' -52.6 NC_006552.1 + 28272 0.69 0.775727
Target:  5'- uCUUUGUGCGCccacCUCGGCcCGAUCGc -3'
miRNA:   3'- cGAAGCGCGUGuu--GAGCUGcGCUAGC- -5'
30725 5' -52.6 NC_006552.1 + 37767 0.69 0.755474
Target:  5'- cGCUgguauccCGCGCucugcaucACAGCgucggcgaUCGGCGCGAUCa -3'
miRNA:   3'- -CGAa------GCGCG--------UGUUG--------AGCUGCGCUAGc -5'
30725 5' -52.6 NC_006552.1 + 34446 0.69 0.755474
Target:  5'- gGCcggCGaGCACAGCagGACGCgGAUCGg -3'
miRNA:   3'- -CGaa-GCgCGUGUUGagCUGCG-CUAGC- -5'
30725 5' -52.6 NC_006552.1 + 38689 0.69 0.745155
Target:  5'- gGCUacCGCGCcCuugguacGCUCGACGCGAgCGa -3'
miRNA:   3'- -CGAa-GCGCGuGu------UGAGCUGCGCUaGC- -5'
30725 5' -52.6 NC_006552.1 + 44202 0.69 0.745155
Target:  5'- uCUUCGCGCuCGuggcGCagGugGCGAUCa -3'
miRNA:   3'- cGAAGCGCGuGU----UGagCugCGCUAGc -5'
30725 5' -52.6 NC_006552.1 + 2069 0.69 0.733673
Target:  5'- gGCgUCGUGCGCGgccugcugaucgaACUCGACGCcggCGg -3'
miRNA:   3'- -CGaAGCGCGUGU-------------UGAGCUGCGcuaGC- -5'
30725 5' -52.6 NC_006552.1 + 14109 0.7 0.702856
Target:  5'- cGCUucaugUCGCGCGCAuC-CGGCGCcGUCa -3'
miRNA:   3'- -CGA-----AGCGCGUGUuGaGCUGCGcUAGc -5'
30725 5' -52.6 NC_006552.1 + 56712 0.72 0.604721
Target:  5'- cGCgUCGCGCGgGAC-CGugGCGAg-- -3'
miRNA:   3'- -CGaAGCGCGUgUUGaGCugCGCUagc -5'
30725 5' -52.6 NC_006552.1 + 38514 0.72 0.582922
Target:  5'- uGCUUaCGCGCuCGAUggUGGCGCGGUUGu -3'
miRNA:   3'- -CGAA-GCGCGuGUUGa-GCUGCGCUAGC- -5'
30725 5' -52.6 NC_006552.1 + 31895 0.72 0.582922
Target:  5'- gGCUUCG-GC-CAGCgCGGCGCGGuUCGg -3'
miRNA:   3'- -CGAAGCgCGuGUUGaGCUGCGCU-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.