Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30729 | 3' | -55.8 | NC_006552.1 | + | 41418 | 0.68 | 0.548589 |
Target: 5'- cGCGCCAguuCGGCCGCGUccguggggAGCGgcaUCAGu -3' miRNA: 3'- uCGCGGU---GUUGGCGCG--------UCGCa--AGUUg -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 8418 | 0.69 | 0.537921 |
Target: 5'- cGGgGCUcaGGCCGCGCcaGGCGcgCAGCa -3' miRNA: 3'- -UCgCGGugUUGGCGCG--UCGCaaGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 62758 | 0.69 | 0.527324 |
Target: 5'- gGGCGCU---GCCGCGCcuGCGagCGACg -3' miRNA: 3'- -UCGCGGuguUGGCGCGu-CGCaaGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 4638 | 0.69 | 0.527324 |
Target: 5'- gGGCGCgACAcgaauuguagGCCGCGCucAGgGUcUCGACu -3' miRNA: 3'- -UCGCGgUGU----------UGGCGCG--UCgCA-AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 12196 | 0.7 | 0.485787 |
Target: 5'- cAGUGCCuugucgGACCGCGCAGaGgccUCAGCg -3' miRNA: 3'- -UCGCGGug----UUGGCGCGUCgCa--AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 61217 | 0.7 | 0.485787 |
Target: 5'- gGGCGaCACAGCCaagGgGGCGUUCGGCu -3' miRNA: 3'- -UCGCgGUGUUGGcg-CgUCGCAAGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 10680 | 0.7 | 0.465606 |
Target: 5'- aAGCGCCACuugccaucaguGCCGCGguGCcagccgGUaucUCGACg -3' miRNA: 3'- -UCGCGGUGu----------UGGCGCguCG------CA---AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 26716 | 0.7 | 0.455681 |
Target: 5'- gGGCGCCgaagGCGucGCCGUGCAGUGggCuuuGCc -3' miRNA: 3'- -UCGCGG----UGU--UGGCGCGUCGCaaGu--UG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 5436 | 0.7 | 0.455681 |
Target: 5'- cGCGCCAguuguucGCCGCGCuGGCGggugaUCGGCg -3' miRNA: 3'- uCGCGGUgu-----UGGCGCG-UCGCa----AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 63556 | 0.7 | 0.455681 |
Target: 5'- uGCGCCACccGCCuGCGCGGCaucgUCGAa -3' miRNA: 3'- uCGCGGUGu-UGG-CGCGUCGca--AGUUg -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 2644 | 0.71 | 0.398669 |
Target: 5'- uGGCgGCCcuucugggcuaGgGACCGCGCGGCGccgaUCAACg -3' miRNA: 3'- -UCG-CGG-----------UgUUGGCGCGUCGCa---AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 11459 | 0.71 | 0.389619 |
Target: 5'- cAGCGCUACGAacUCGCGCAGUGcagAGCg -3' miRNA: 3'- -UCGCGGUGUU--GGCGCGUCGCaagUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 5618 | 0.72 | 0.379821 |
Target: 5'- cAGCGCgGCAACCagcaCGCGGUuacggcuGUUCGACa -3' miRNA: 3'- -UCGCGgUGUUGGc---GCGUCG-------CAAGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 35430 | 0.72 | 0.354792 |
Target: 5'- uGgGCCGCAGCCuucGCGUcuugcGCGUUCGGCu -3' miRNA: 3'- uCgCGGUGUUGG---CGCGu----CGCAAGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 50082 | 0.72 | 0.354792 |
Target: 5'- gAGCGCgACAACCGCacGCGgGCGgaacgcgCAGCa -3' miRNA: 3'- -UCGCGgUGUUGGCG--CGU-CGCaa-----GUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 61979 | 0.73 | 0.312892 |
Target: 5'- uGCGCCGCugugcagcagcgaGGCCgaacucuGCGCGGCGUUCAu- -3' miRNA: 3'- uCGCGGUG-------------UUGG-------CGCGUCGCAAGUug -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 55339 | 0.73 | 0.299288 |
Target: 5'- aGGCGaCCGCGACUuCGUGGgGUUCAGCc -3' miRNA: 3'- -UCGC-GGUGUUGGcGCGUCgCAAGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 50513 | 0.73 | 0.299288 |
Target: 5'- cGGCGCCgGCAGCCGUcaAGCGagCAACa -3' miRNA: 3'- -UCGCGG-UGUUGGCGcgUCGCaaGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 26473 | 0.74 | 0.291931 |
Target: 5'- -aCGCCACAGCCGCGCcguaGGUGccuugacUCAACg -3' miRNA: 3'- ucGCGGUGUUGGCGCG----UCGCa------AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 33536 | 0.74 | 0.277642 |
Target: 5'- uGGUG-CGCAGgCGCGCAGCGgcCGACa -3' miRNA: 3'- -UCGCgGUGUUgGCGCGUCGCaaGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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