Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30731 | 3' | -65.6 | NC_006552.1 | + | 48499 | 1.12 | 0.000085 |
Target: 5'- uGCGAGCCGGCCUGAGCCCGCGCGCCCa -3' miRNA: 3'- -CGCUCGGCCGGACUCGGGCGCGCGGG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 64124 | 0.72 | 0.103836 |
Target: 5'- cGCaAGCUGuGCCUGAuucgcaacgcaGCUCGCGCcGCCCu -3' miRNA: 3'- -CGcUCGGC-CGGACU-----------CGGGCGCG-CGGG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 32645 | 0.72 | 0.112258 |
Target: 5'- uGCGAGCgCgcuccugcugGGCCUgcuGAGCCUGCGCGaucaCCu -3' miRNA: 3'- -CGCUCG-G----------CCGGA---CUCGGGCGCGCg---GG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 14087 | 0.71 | 0.121314 |
Target: 5'- uGCGAuacgGCCGGCC-GGGCCgcgcuucauguCGCGCGCauCCg -3' miRNA: 3'- -CGCU----CGGCCGGaCUCGG-----------GCGCGCG--GG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 15336 | 0.71 | 0.131047 |
Target: 5'- cGCGAcGCaCGGCCUGcAGCgCCGCagGCuGCUCg -3' miRNA: 3'- -CGCU-CG-GCCGGAC-UCG-GGCG--CG-CGGG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 9734 | 0.7 | 0.161831 |
Target: 5'- cGCGAuucaucagcauggcGCCGGCCUGcugaucaaucuucGCCCGCuGCuGUCCg -3' miRNA: 3'- -CGCU--------------CGGCCGGACu------------CGGGCG-CG-CGGG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 7221 | 0.7 | 0.160613 |
Target: 5'- aGCGAGCCGcuGCCgcGGGCCUGCGCcaUCa -3' miRNA: 3'- -CGCUCGGC--CGGa-CUCGGGCGCGcgGG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 12947 | 0.7 | 0.160613 |
Target: 5'- aGCGcGCUGGCCUuGGCCUggcgGUGCGUUCg -3' miRNA: 3'- -CGCuCGGCCGGAcUCGGG----CGCGCGGG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 8535 | 0.7 | 0.156612 |
Target: 5'- cGCGcaCCGGCUUGcuGUCCacgucGCGCGCCCa -3' miRNA: 3'- -CGCucGGCCGGACu-CGGG-----CGCGCGGG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 45863 | 0.69 | 0.196062 |
Target: 5'- uGCGGGC--GUCUGAaCCagGCGCGCCCa -3' miRNA: 3'- -CGCUCGgcCGGACUcGGg-CGCGCGGG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 32702 | 0.69 | 0.168893 |
Target: 5'- cGCcGGCCGGCgCgGGGCCgGUggaGCGCUCg -3' miRNA: 3'- -CGcUCGGCCG-GaCUCGGgCG---CGCGGG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 27595 | 0.68 | 0.225333 |
Target: 5'- aGCGGGaaaGGCUUGAggauGCCCagguaggugcugauGCGCGCCg -3' miRNA: 3'- -CGCUCgg-CCGGACU----CGGG--------------CGCGCGGg -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 20533 | 0.68 | 0.221547 |
Target: 5'- --cAGCCGGCCUu-GCUCGCGCaCCa -3' miRNA: 3'- cgcUCGGCCGGAcuCGGGCGCGcGGg -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 37826 | 0.68 | 0.21258 |
Target: 5'- cGCGAucugggcGCCGGCCUGcauggcacugaaugcGGCCUGCaC-CCCg -3' miRNA: 3'- -CGCU-------CGGCCGGAC---------------UCGGGCGcGcGGG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 52104 | 0.68 | 0.20949 |
Target: 5'- aGCcAGCCagcaaGGCagcaGAGCCCagcgcuacccagugGCGCGCCCg -3' miRNA: 3'- -CGcUCGG-----CCGga--CUCGGG--------------CGCGCGGG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 21918 | 0.68 | 0.205934 |
Target: 5'- aGCGccuGCaCGGCCUGA---UGCGCGUCCa -3' miRNA: 3'- -CGCu--CG-GCCGGACUcggGCGCGCGGG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 57475 | 0.68 | 0.198979 |
Target: 5'- gGUGGcGCCGGUacgggcuuggaaaUGGGCCUGgGCcGCCCg -3' miRNA: 3'- -CGCU-CGGCCGg------------ACUCGGGCgCG-CGGG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 60420 | 0.67 | 0.238158 |
Target: 5'- ---cGCCGGCacucGCCCGCGCacuggaccagGCCCg -3' miRNA: 3'- cgcuCGGCCGgacuCGGGCGCG----------CGGG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 12848 | 0.67 | 0.243922 |
Target: 5'- uGCGcugcccGGCgGGCCUGGauuuCCUGCuGCGCCUc -3' miRNA: 3'- -CGC------UCGgCCGGACUc---GGGCG-CGCGGG- -5' |
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30731 | 3' | -65.6 | NC_006552.1 | + | 17962 | 0.67 | 0.243922 |
Target: 5'- cCGAGuuaCCGGCguuguaCUGAGCCaaCGCGUCCg -3' miRNA: 3'- cGCUC---GGCCG------GACUCGGgcGCGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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