miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30732 5' -52.7 NC_006552.1 + 50402 0.66 0.9031
Target:  5'- cGAAACGCAaagccauCUgGGugGGCGGCCuGAu- -3'
miRNA:   3'- -CUUUGCGU-------GGgCCugCUGUUGG-CUuc -5'
30732 5' -52.7 NC_006552.1 + 5659 0.66 0.896902
Target:  5'- -cAACGCcCCCGGAUGGCcucgAugCGGGc -3'
miRNA:   3'- cuUUGCGuGGGCCUGCUG----UugGCUUc -5'
30732 5' -52.7 NC_006552.1 + 33543 0.66 0.896199
Target:  5'- cAGGCGCGCagCGGcCGACAgcagcaggccagcGCCGAAa -3'
miRNA:   3'- cUUUGCGUGg-GCCuGCUGU-------------UGGCUUc -5'
30732 5' -52.7 NC_006552.1 + 18791 0.66 0.889761
Target:  5'- cGAACGUGCCUGGGCGuuGGCgGuauAGa -3'
miRNA:   3'- cUUUGCGUGGGCCUGCugUUGgCu--UC- -5'
30732 5' -52.7 NC_006552.1 + 50296 0.66 0.889761
Target:  5'- -uGGCGCcCgCCGGGCG-CucACCGAAGu -3'
miRNA:   3'- cuUUGCGuG-GGCCUGCuGu-UGGCUUC- -5'
30732 5' -52.7 NC_006552.1 + 21167 0.66 0.882359
Target:  5'- uAGGCGCAUCCGGccGCGuCGguGCCGGc- -3'
miRNA:   3'- cUUUGCGUGGGCC--UGCuGU--UGGCUuc -5'
30732 5' -52.7 NC_006552.1 + 1978 0.66 0.882359
Target:  5'- ---cUGCACCCGaGCGACAgcGCUGGGc -3'
miRNA:   3'- cuuuGCGUGGGCcUGCUGU--UGGCUUc -5'
30732 5' -52.7 NC_006552.1 + 34034 0.67 0.858634
Target:  5'- cGAAACGaauCuuGGA--GCAGCCGAGGa -3'
miRNA:   3'- -CUUUGCgu-GggCCUgcUGUUGGCUUC- -5'
30732 5' -52.7 NC_006552.1 + 40946 0.67 0.858634
Target:  5'- gGAGACGUGCaggCGGugGAUgguGCCGGAc -3'
miRNA:   3'- -CUUUGCGUGg--GCCugCUGu--UGGCUUc -5'
30732 5' -52.7 NC_006552.1 + 6440 0.67 0.858634
Target:  5'- ---cCGCGCCCGG-CGACAucuCC-AGGa -3'
miRNA:   3'- cuuuGCGUGGGCCuGCUGUu--GGcUUC- -5'
30732 5' -52.7 NC_006552.1 + 57423 0.67 0.841624
Target:  5'- ----gGC-CCUGGACGAC-ACCGAc- -3'
miRNA:   3'- cuuugCGuGGGCCUGCUGuUGGCUuc -5'
30732 5' -52.7 NC_006552.1 + 54943 0.67 0.823733
Target:  5'- aGGAGCGgGCaCUGGACGAC-GCUGGu- -3'
miRNA:   3'- -CUUUGCgUG-GGCCUGCUGuUGGCUuc -5'
30732 5' -52.7 NC_006552.1 + 16821 0.68 0.805037
Target:  5'- uGGAGCcaGCGCCCGaACGccACGACCGAc- -3'
miRNA:   3'- -CUUUG--CGUGGGCcUGC--UGUUGGCUuc -5'
30732 5' -52.7 NC_006552.1 + 61441 0.68 0.805037
Target:  5'- ---cCGCGCCCGGgccguACGGCAauacgaguGCCGGGa -3'
miRNA:   3'- cuuuGCGUGGGCC-----UGCUGU--------UGGCUUc -5'
30732 5' -52.7 NC_006552.1 + 18145 0.68 0.805037
Target:  5'- -uAACGguguaGCCCGGGCGGauuguuguGCCGGAGa -3'
miRNA:   3'- cuUUGCg----UGGGCCUGCUgu------UGGCUUC- -5'
30732 5' -52.7 NC_006552.1 + 5808 0.69 0.765559
Target:  5'- -cAACGCGCCCgcaaGGGCGcCAGCCa--- -3'
miRNA:   3'- cuUUGCGUGGG----CCUGCuGUUGGcuuc -5'
30732 5' -52.7 NC_006552.1 + 24789 0.69 0.755319
Target:  5'- ----aGCACCUGGGCG-CGggugaugacGCCGGAGa -3'
miRNA:   3'- cuuugCGUGGGCCUGCuGU---------UGGCUUC- -5'
30732 5' -52.7 NC_006552.1 + 33419 0.69 0.744953
Target:  5'- cGAGGCGCucGCCgUGGACGAUcACCuGGAGc -3'
miRNA:   3'- -CUUUGCG--UGG-GCCUGCUGuUGG-CUUC- -5'
30732 5' -52.7 NC_006552.1 + 63481 0.69 0.734473
Target:  5'- ---cCGCugCCGGcCGccggcgccggaGCAACCGGAGa -3'
miRNA:   3'- cuuuGCGugGGCCuGC-----------UGUUGGCUUC- -5'
30732 5' -52.7 NC_006552.1 + 44414 0.7 0.713216
Target:  5'- --uGCGCugCCGGcCGGCGaaACCGGc- -3'
miRNA:   3'- cuuUGCGugGGCCuGCUGU--UGGCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.