Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30737 | 5' | -56.9 | NC_006552.1 | + | 45741 | 1.09 | 0.000889 |
Target: 5'- gACAGAUCGAUCACACCGGCCGCAGCGa -3' miRNA: 3'- -UGUCUAGCUAGUGUGGCCGGCGUCGC- -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 35511 | 0.83 | 0.063539 |
Target: 5'- aACAGuUCGAUgACAUCGGCCGCGGUGc -3' miRNA: 3'- -UGUCuAGCUAgUGUGGCCGGCGUCGC- -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 5469 | 0.71 | 0.372713 |
Target: 5'- gGCGGAUCGGUCAgcuuCACCgauuGGCCauucucGUAGCGg -3' miRNA: 3'- -UGUCUAGCUAGU----GUGG----CCGG------CGUCGC- -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 5253 | 0.71 | 0.38134 |
Target: 5'- aGCAGGUCGucgCACGCCuGCCGguaguugcCGGCGa -3' miRNA: 3'- -UGUCUAGCua-GUGUGGcCGGC--------GUCGC- -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 2085 | 0.71 | 0.398989 |
Target: 5'- uGCuGAUCGAacUCgACGCCGGCgGCAcGCu -3' miRNA: 3'- -UGuCUAGCU--AG-UGUGGCCGgCGU-CGc -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 10826 | 0.7 | 0.417153 |
Target: 5'- cACAGG-CGGUUguuCGCCgGGCUGCGGCGc -3' miRNA: 3'- -UGUCUaGCUAGu--GUGG-CCGGCGUCGC- -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 5685 | 0.7 | 0.435812 |
Target: 5'- gGCAGcgcucUCGGcugauUCGCGgCGGUCGCGGCGa -3' miRNA: 3'- -UGUCu----AGCU-----AGUGUgGCCGGCGUCGC- -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 28718 | 0.7 | 0.454944 |
Target: 5'- gGCAuuguuGUCGAUCugcgggaaGCCGGCCGgCGGCGa -3' miRNA: 3'- -UGUc----UAGCUAGug------UGGCCGGC-GUCGC- -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 23670 | 0.68 | 0.525183 |
Target: 5'- gUAGAaCGGUC-CACUGGCCacGCGGCu -3' miRNA: 3'- uGUCUaGCUAGuGUGGCCGG--CGUCGc -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 33199 | 0.68 | 0.525183 |
Target: 5'- cCAGGUgGAguugCACGCCGGCCaggauGCcGCGc -3' miRNA: 3'- uGUCUAgCUa---GUGUGGCCGG-----CGuCGC- -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 26685 | 0.68 | 0.53557 |
Target: 5'- uGCGGAUCGAccuuUCccCACUGGUCGCccagGGCGc -3' miRNA: 3'- -UGUCUAGCU----AGu-GUGGCCGGCG----UCGC- -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 53802 | 0.68 | 0.55655 |
Target: 5'- cCGGGUCGugcucUUugGCCGGCuggccgaaauCGCAGCGc -3' miRNA: 3'- uGUCUAGCu----AGugUGGCCG----------GCGUCGC- -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 2049 | 0.68 | 0.577761 |
Target: 5'- gACAGGcgcUUGAgCGCGCCGGCgucgugCGCGGCc -3' miRNA: 3'- -UGUCU---AGCUaGUGUGGCCG------GCGUCGc -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 61877 | 0.67 | 0.588434 |
Target: 5'- cCAGGcUGaAUUGCGCCGGCUGCGGaCGc -3' miRNA: 3'- uGUCUaGC-UAGUGUGGCCGGCGUC-GC- -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 24247 | 0.67 | 0.588434 |
Target: 5'- gGCGGAacgcaUCGGUUgugguCGCCGGCacuaccgGCAGCGg -3' miRNA: 3'- -UGUCU-----AGCUAGu----GUGGCCGg------CGUCGC- -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 5114 | 0.67 | 0.620632 |
Target: 5'- cGCGGG-CGGUCAUugCGGCaccuGCAcgGCGa -3' miRNA: 3'- -UGUCUaGCUAGUGugGCCGg---CGU--CGC- -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 61683 | 0.67 | 0.631395 |
Target: 5'- cACGGAccuggccgcUCGAcCACGCCGGCauccucacCGCGcGCGg -3' miRNA: 3'- -UGUCU---------AGCUaGUGUGGCCG--------GCGU-CGC- -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 48367 | 0.66 | 0.642159 |
Target: 5'- -gAGGUCGAUU--ACCGGUuccauCGCGGCGc -3' miRNA: 3'- ugUCUAGCUAGugUGGCCG-----GCGUCGC- -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 15411 | 0.66 | 0.642159 |
Target: 5'- uCAGGUUGGUCGCuuucgccUCGGUCGCAGa- -3' miRNA: 3'- uGUCUAGCUAGUGu------GGCCGGCGUCgc -5' |
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30737 | 5' | -56.9 | NC_006552.1 | + | 57015 | 0.66 | 0.642159 |
Target: 5'- uGCuGAUgGAgcaUCACgACCGGCCG-AGCa -3' miRNA: 3'- -UGuCUAgCU---AGUG-UGGCCGGCgUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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