miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30737 5' -56.9 NC_006552.1 + 456 0.66 0.685032
Target:  5'- cUAGAUCGAagUC-UGCCGGC-GCAGCc -3'
miRNA:   3'- uGUCUAGCU--AGuGUGGCCGgCGUCGc -5'
30737 5' -56.9 NC_006552.1 + 2049 0.68 0.577761
Target:  5'- gACAGGcgcUUGAgCGCGCCGGCgucgugCGCGGCc -3'
miRNA:   3'- -UGUCU---AGCUaGUGUGGCCG------GCGUCGc -5'
30737 5' -56.9 NC_006552.1 + 2085 0.71 0.398989
Target:  5'- uGCuGAUCGAacUCgACGCCGGCgGCAcGCu -3'
miRNA:   3'- -UGuCUAGCU--AG-UGUGGCCGgCGU-CGc -5'
30737 5' -56.9 NC_006552.1 + 2127 0.66 0.652915
Target:  5'- aGCAGAUCccuGAUgACuucaGGCCGUGGCGc -3'
miRNA:   3'- -UGUCUAG---CUAgUGugg-CCGGCGUCGC- -5'
30737 5' -56.9 NC_006552.1 + 5114 0.67 0.620632
Target:  5'- cGCGGG-CGGUCAUugCGGCaccuGCAcgGCGa -3'
miRNA:   3'- -UGUCUaGCUAGUGugGCCGg---CGU--CGC- -5'
30737 5' -56.9 NC_006552.1 + 5253 0.71 0.38134
Target:  5'- aGCAGGUCGucgCACGCCuGCCGguaguugcCGGCGa -3'
miRNA:   3'- -UGUCUAGCua-GUGUGGcCGGC--------GUCGC- -5'
30737 5' -56.9 NC_006552.1 + 5469 0.71 0.372713
Target:  5'- gGCGGAUCGGUCAgcuuCACCgauuGGCCauucucGUAGCGg -3'
miRNA:   3'- -UGUCUAGCUAGU----GUGG----CCGG------CGUCGC- -5'
30737 5' -56.9 NC_006552.1 + 5685 0.7 0.435812
Target:  5'- gGCAGcgcucUCGGcugauUCGCGgCGGUCGCGGCGa -3'
miRNA:   3'- -UGUCu----AGCU-----AGUGUgGCCGGCGUCGC- -5'
30737 5' -56.9 NC_006552.1 + 10826 0.7 0.417153
Target:  5'- cACAGG-CGGUUguuCGCCgGGCUGCGGCGc -3'
miRNA:   3'- -UGUCUaGCUAGu--GUGG-CCGGCGUCGC- -5'
30737 5' -56.9 NC_006552.1 + 12612 0.66 0.652915
Target:  5'- --cGAU-GAUguCGCCGGCCGUAGUc -3'
miRNA:   3'- uguCUAgCUAguGUGGCCGGCGUCGc -5'
30737 5' -56.9 NC_006552.1 + 15411 0.66 0.642159
Target:  5'- uCAGGUUGGUCGCuuucgccUCGGUCGCAGa- -3'
miRNA:   3'- uGUCUAGCUAGUGu------GGCCGGCGUCgc -5'
30737 5' -56.9 NC_006552.1 + 19550 0.66 0.652915
Target:  5'- gACAGA------GCGCCGGCCGCuAGCu -3'
miRNA:   3'- -UGUCUagcuagUGUGGCCGGCG-UCGc -5'
30737 5' -56.9 NC_006552.1 + 19724 0.66 0.674361
Target:  5'- uCGGcGUCGGccacguUgGCGCUGGCCGCuGCGc -3'
miRNA:   3'- uGUC-UAGCU------AgUGUGGCCGGCGuCGC- -5'
30737 5' -56.9 NC_006552.1 + 21122 0.66 0.652915
Target:  5'- uAUAGGUCGGcugcUCGCccagguugACgGGCgGCGGCGa -3'
miRNA:   3'- -UGUCUAGCU----AGUG--------UGgCCGgCGUCGC- -5'
30737 5' -56.9 NC_006552.1 + 21498 0.66 0.695654
Target:  5'- aGCGGGUagcuguaGGUCGCugCGcuGCCGCuuuGCGu -3'
miRNA:   3'- -UGUCUAg------CUAGUGugGC--CGGCGu--CGC- -5'
30737 5' -56.9 NC_006552.1 + 23670 0.68 0.525183
Target:  5'- gUAGAaCGGUC-CACUGGCCacGCGGCu -3'
miRNA:   3'- uGUCUaGCUAGuGUGGCCGG--CGUCGc -5'
30737 5' -56.9 NC_006552.1 + 24247 0.67 0.588434
Target:  5'- gGCGGAacgcaUCGGUUgugguCGCCGGCacuaccgGCAGCGg -3'
miRNA:   3'- -UGUCU-----AGCUAGu----GUGGCCGg------CGUCGC- -5'
30737 5' -56.9 NC_006552.1 + 26685 0.68 0.53557
Target:  5'- uGCGGAUCGAccuuUCccCACUGGUCGCccagGGCGc -3'
miRNA:   3'- -UGUCUAGCU----AGu-GUGGCCGGCG----UCGC- -5'
30737 5' -56.9 NC_006552.1 + 28718 0.7 0.454944
Target:  5'- gGCAuuguuGUCGAUCugcgggaaGCCGGCCGgCGGCGa -3'
miRNA:   3'- -UGUc----UAGCUAGug------UGGCCGGC-GUCGC- -5'
30737 5' -56.9 NC_006552.1 + 33199 0.68 0.525183
Target:  5'- cCAGGUgGAguugCACGCCGGCCaggauGCcGCGc -3'
miRNA:   3'- uGUCUAgCUa---GUGUGGCCGG-----CGuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.