Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30739 | 3' | -61 | NC_006552.1 | + | 12371 | 0.66 | 0.494749 |
Target: 5'- cGGCGCGcuUCuGCaacGGCCUGCGCG-UCg -3' miRNA: 3'- -CCGCGC--AGcCGga-CCGGGUGUGCuAG- -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 37793 | 0.66 | 0.482089 |
Target: 5'- --aGCGUCGGCgaucggcgcgaucaUUGGCauCUGCGCGAUCu -3' miRNA: 3'- ccgCGCAGCCG--------------GACCG--GGUGUGCUAG- -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 12555 | 0.66 | 0.475337 |
Target: 5'- cGCGC-UCGGCCaguUGGaCCACGaacaGGUCa -3' miRNA: 3'- cCGCGcAGCCGG---ACCgGGUGUg---CUAG- -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 8244 | 0.66 | 0.465775 |
Target: 5'- cGGCGCG--GGCCaUGGUguCCAggcUACGGUCg -3' miRNA: 3'- -CCGCGCagCCGG-ACCG--GGU---GUGCUAG- -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 26556 | 0.67 | 0.428566 |
Target: 5'- aGGCGC-UCGGCCUGcGCgCCAUcguaGGUg -3' miRNA: 3'- -CCGCGcAGCCGGAC-CG-GGUGug--CUAg -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 1999 | 0.67 | 0.428566 |
Target: 5'- gGGCuGCaUCaGCCUGGaUCCGCugGAUg -3' miRNA: 3'- -CCG-CGcAGcCGGACC-GGGUGugCUAg -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 37974 | 0.67 | 0.427659 |
Target: 5'- gGGCGUcuugcaCGGCCUGGUcgaucugCUGCugGAUCu -3' miRNA: 3'- -CCGCGca----GCCGGACCG-------GGUGugCUAG- -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 57316 | 0.67 | 0.400968 |
Target: 5'- cGCGCGcagUGGCCUGGCgCAgcucgacaucuucCACGAc- -3' miRNA: 3'- cCGCGCa--GCCGGACCGgGU-------------GUGCUag -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 9160 | 0.67 | 0.39317 |
Target: 5'- uGCGCGUa-GCCgcucgcGGCauCCGCGCGAUCc -3' miRNA: 3'- cCGCGCAgcCGGa-----CCG--GGUGUGCUAG- -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 12947 | 0.68 | 0.384622 |
Target: 5'- aGCGCGcUGGCCuUGGC-CugGCGGUg -3' miRNA: 3'- cCGCGCaGCCGG-ACCGgGugUGCUAg -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 17606 | 0.68 | 0.382928 |
Target: 5'- cGGCGCGgguuuggaaaccccUGGCCUcuugcucaccagccaGGCgCugGCGAUCg -3' miRNA: 3'- -CCGCGCa-------------GCCGGA---------------CCGgGugUGCUAG- -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 13621 | 0.68 | 0.351683 |
Target: 5'- uGCGCcuuGUCGGCacgGGCCUGCucggcggccugGCGAUCu -3' miRNA: 3'- cCGCG---CAGCCGga-CCGGGUG-----------UGCUAG- -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 43864 | 0.68 | 0.343768 |
Target: 5'- uGCGCG-CGacuaaCUGGCCCAUGCGGUg -3' miRNA: 3'- cCGCGCaGCcg---GACCGGGUGUGCUAg -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 7213 | 0.69 | 0.328323 |
Target: 5'- cGGCGCGcagCGaGCCgcugccgcgGGCCUGCGCcAUCa -3' miRNA: 3'- -CCGCGCa--GC-CGGa--------CCGGGUGUGcUAG- -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 32970 | 0.69 | 0.30613 |
Target: 5'- cGCGCGUCGGCgucCUGGCUCccaGCG-UCc -3' miRNA: 3'- cCGCGCAGCCG---GACCGGGug-UGCuAG- -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 49171 | 0.69 | 0.30613 |
Target: 5'- cGGCugcccgcacuGCGgCGGCCUGGUCCGgcUGGUCa -3' miRNA: 3'- -CCG----------CGCaGCCGGACCGGGUguGCUAG- -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 21018 | 0.7 | 0.258867 |
Target: 5'- cGGCGCGUCGGguaggucguCCaUGucGCCCACAUccaGGUCg -3' miRNA: 3'- -CCGCGCAGCC---------GG-AC--CGGGUGUG---CUAG- -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 57413 | 0.71 | 0.248937 |
Target: 5'- ----aGUaCGGCCUGGCCCuggacgacaccgacgACGCGAUCg -3' miRNA: 3'- ccgcgCA-GCCGGACCGGG---------------UGUGCUAG- -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 48499 | 0.71 | 0.246504 |
Target: 5'- uGCGaGcCGGCCUGaGCCCGCGCGc-- -3' miRNA: 3'- cCGCgCaGCCGGAC-CGGGUGUGCuag -5' |
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30739 | 3' | -61 | NC_006552.1 | + | 32649 | 0.72 | 0.186571 |
Target: 5'- aGCGCGcuccugcUgGGCCUGcugaGCCUGCGCGAUCa -3' miRNA: 3'- cCGCGC-------AgCCGGAC----CGGGUGUGCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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