Results 1 - 20 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 740 | 0.66 | 0.691538 |
Target: 5'- --gCGACGUGCAGCGcuccCCGGCGc-UCGa -3' miRNA: 3'- cgaGCUGCGCGUCGU----GGUCGUucAGC- -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 2095 | 0.7 | 0.469517 |
Target: 5'- aCUCGACGCcgGCGGCACgCuGCugcuuGUCGa -3' miRNA: 3'- cGAGCUGCG--CGUCGUG-GuCGuu---CAGC- -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 2658 | 0.68 | 0.594437 |
Target: 5'- gGCUaggGAcCGCGCGGCGCCGaucaacGCucgGGUCGa -3' miRNA: 3'- -CGAg--CU-GCGCGUCGUGGU------CGu--UCAGC- -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 3234 | 0.66 | 0.733689 |
Target: 5'- gGCUCGGCuggaaggaucGcCGCAguGCGCCGG-AGGUCGu -3' miRNA: 3'- -CGAGCUG----------C-GCGU--CGUGGUCgUUCAGC- -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 3581 | 0.67 | 0.680835 |
Target: 5'- gGC-CGAgcCGC-CGGCGCCGGCAGGa-- -3' miRNA: 3'- -CGaGCU--GCGcGUCGUGGUCGUUCagc -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 4830 | 0.74 | 0.289451 |
Target: 5'- cGCgcacagggCGGuCGCGCAGCucACCAGCAAGgCGa -3' miRNA: 3'- -CGa-------GCU-GCGCGUCG--UGGUCGUUCaGC- -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 5608 | 0.67 | 0.670088 |
Target: 5'- gGCUgaCGGucaGCGCGGCaACCAGCAcgcGGUUa -3' miRNA: 3'- -CGA--GCUg--CGCGUCG-UGGUCGU---UCAGc -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 5675 | 0.67 | 0.666856 |
Target: 5'- cCUCGAUGCggGCAGCGCUcucggcugauucgcGGC-GGUCGc -3' miRNA: 3'- cGAGCUGCG--CGUCGUGG--------------UCGuUCAGC- -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 7181 | 0.67 | 0.626852 |
Target: 5'- uGCUCGagcaucacccaaGCGCGUcccguccccGGCGCgCAGCGAGcCGc -3' miRNA: 3'- -CGAGC------------UGCGCG---------UCGUG-GUCGUUCaGC- -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 8103 | 0.68 | 0.601984 |
Target: 5'- gGUUCGugGCGCguuccggccAugcaucagccaucuGCGCCAGguGGUCGc -3' miRNA: 3'- -CGAGCugCGCG---------U--------------CGUGGUCguUCAGC- -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 8414 | 0.68 | 0.594437 |
Target: 5'- uGCUCGGggcucaggcCGCGCcaGGCGCgCAGCA-GUCc -3' miRNA: 3'- -CGAGCU---------GCGCG--UCGUG-GUCGUuCAGc -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 8507 | 0.69 | 0.530647 |
Target: 5'- cGCaUGGCGCGCucaGCCAGCGAaUCGa -3' miRNA: 3'- -CGaGCUGCGCGucgUGGUCGUUcAGC- -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 12017 | 0.7 | 0.499668 |
Target: 5'- gGCUCGcCGCGguGUuucuccugcucGCC-GUAAGUCGg -3' miRNA: 3'- -CGAGCuGCGCguCG-----------UGGuCGUUCAGC- -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 12364 | 0.66 | 0.691538 |
Target: 5'- gGCgucgCGGCGCGCuucuGCaacgGCCuGCGcGUCGg -3' miRNA: 3'- -CGa---GCUGCGCGu---CG----UGGuCGUuCAGC- -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 15725 | 0.67 | 0.648499 |
Target: 5'- cGCUCaccGACGCGCuGCauguaGCCGGCAuccGG-CGg -3' miRNA: 3'- -CGAG---CUGCGCGuCG-----UGGUCGU---UCaGC- -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 20102 | 0.68 | 0.616031 |
Target: 5'- uCUCGGCGCGCAcggaugcccccuGCAUCAGCGccUUGu -3' miRNA: 3'- cGAGCUGCGCGU------------CGUGGUCGUucAGC- -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 20684 | 0.67 | 0.637678 |
Target: 5'- uGCUCGAUG---GGCGCCGGCA-GUCc -3' miRNA: 3'- -CGAGCUGCgcgUCGUGGUCGUuCAGc -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 21154 | 0.66 | 0.691538 |
Target: 5'- gGCggCGACGCGauaGGCGcauCCGGCcgcGUCGg -3' miRNA: 3'- -CGa-GCUGCGCg--UCGU---GGUCGuu-CAGC- -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 22068 | 0.68 | 0.572967 |
Target: 5'- cGCUgauGCGCGCGGCAuCCAGCAccagGGUg- -3' miRNA: 3'- -CGAgc-UGCGCGUCGU-GGUCGU----UCAgc -5' |
|||||||
30744 | 5' | -56.1 | NC_006552.1 | + | 22366 | 0.73 | 0.319146 |
Target: 5'- -aUCGGUGUGCAGCACCAGCAGccCGu -3' miRNA: 3'- cgAGCUGCGCGUCGUGGUCGUUcaGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home