miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30744 5' -56.1 NC_006552.1 + 3234 0.66 0.733689
Target:  5'- gGCUCGGCuggaaggaucGcCGCAguGCGCCGG-AGGUCGu -3'
miRNA:   3'- -CGAGCUG----------C-GCGU--CGUGGUCgUUCAGC- -5'
30744 5' -56.1 NC_006552.1 + 59085 0.7 0.499668
Target:  5'- cGUUCcuGAUGCGCuaucacAGCACCGGC-GGUCa -3'
miRNA:   3'- -CGAG--CUGCGCG------UCGUGGUCGuUCAGc -5'
30744 5' -56.1 NC_006552.1 + 8507 0.69 0.530647
Target:  5'- cGCaUGGCGCGCucaGCCAGCGAaUCGa -3'
miRNA:   3'- -CGaGCUGCGCGucgUGGUCGUUcAGC- -5'
30744 5' -56.1 NC_006552.1 + 51857 0.69 0.541132
Target:  5'- cUUCGAgcaaGCGgAGCGCCAGCGgcaggAGUUGg -3'
miRNA:   3'- cGAGCUg---CGCgUCGUGGUCGU-----UCAGC- -5'
30744 5' -56.1 NC_006552.1 + 41972 0.69 0.551684
Target:  5'- uGCUCGAagcCGUgGCAGUACCGGCAGc--- -3'
miRNA:   3'- -CGAGCU---GCG-CGUCGUGGUCGUUcagc -5'
30744 5' -56.1 NC_006552.1 + 62590 0.69 0.551684
Target:  5'- gGCUCGACaagggcgccgaGCGCGGCACguGgguuGAGUCu -3'
miRNA:   3'- -CGAGCUG-----------CGCGUCGUGguCg---UUCAGc -5'
30744 5' -56.1 NC_006552.1 + 33067 0.68 0.561234
Target:  5'- aCUCGGCGUagggaacGCAGCACgGGUgcGUCu -3'
miRNA:   3'- cGAGCUGCG-------CGUCGUGgUCGuuCAGc -5'
30744 5' -56.1 NC_006552.1 + 46418 0.68 0.572967
Target:  5'- gGCUUGGCGC-CAcCACCcagagugcGGCAAGUCa -3'
miRNA:   3'- -CGAGCUGCGcGUcGUGG--------UCGUUCAGc -5'
30744 5' -56.1 NC_006552.1 + 22068 0.68 0.572967
Target:  5'- cGCUgauGCGCGCGGCAuCCAGCAccagGGUg- -3'
miRNA:   3'- -CGAgc-UGCGCGUCGU-GGUCGU----UCAgc -5'
30744 5' -56.1 NC_006552.1 + 12017 0.7 0.499668
Target:  5'- gGCUCGcCGCGguGUuucuccugcucGCC-GUAAGUCGg -3'
miRNA:   3'- -CGAGCuGCGCguCG-----------UGGuCGUUCAGC- -5'
30744 5' -56.1 NC_006552.1 + 50098 0.7 0.499668
Target:  5'- cGCgggCGgaACGCGCAGCACggCGGCGcGUUGa -3'
miRNA:   3'- -CGa--GC--UGCGCGUCGUG--GUCGUuCAGC- -5'
30744 5' -56.1 NC_006552.1 + 59285 0.7 0.479467
Target:  5'- -aUCGAC-CGCGGCGCUgacGGCAAGcCGu -3'
miRNA:   3'- cgAGCUGcGCGUCGUGG---UCGUUCaGC- -5'
30744 5' -56.1 NC_006552.1 + 4830 0.74 0.289451
Target:  5'- cGCgcacagggCGGuCGCGCAGCucACCAGCAAGgCGa -3'
miRNA:   3'- -CGa-------GCU-GCGCGUCG--UGGUCGUUCaGC- -5'
30744 5' -56.1 NC_006552.1 + 32184 0.73 0.319146
Target:  5'- cCUCGGC-CGacuuCAGCACCGGCAuGGUCGg -3'
miRNA:   3'- cGAGCUGcGC----GUCGUGGUCGU-UCAGC- -5'
30744 5' -56.1 NC_006552.1 + 22366 0.73 0.319146
Target:  5'- -aUCGGUGUGCAGCACCAGCAGccCGu -3'
miRNA:   3'- cgAGCUGCGCGUCGUGGUCGUUcaGC- -5'
30744 5' -56.1 NC_006552.1 + 34373 0.73 0.326918
Target:  5'- cGUUCGACGCGC-GCGCCAGUGcAG-Ca -3'
miRNA:   3'- -CGAGCUGCGCGuCGUGGUCGU-UCaGc -5'
30744 5' -56.1 NC_006552.1 + 32061 0.73 0.34288
Target:  5'- cCUCcACGCGCAGaauGCCAGCccGGUCGg -3'
miRNA:   3'- cGAGcUGCGCGUCg--UGGUCGu-UCAGC- -5'
30744 5' -56.1 NC_006552.1 + 44208 0.71 0.403062
Target:  5'- cGCUCGugGCGCagguGGCgAUCAcGCA-GUCGg -3'
miRNA:   3'- -CGAGCugCGCG----UCG-UGGU-CGUuCAGC- -5'
30744 5' -56.1 NC_006552.1 + 2095 0.7 0.469517
Target:  5'- aCUCGACGCcgGCGGCACgCuGCugcuuGUCGa -3'
miRNA:   3'- cGAGCUGCG--CGUCGUG-GuCGuu---CAGC- -5'
30744 5' -56.1 NC_006552.1 + 52002 0.7 0.479467
Target:  5'- aGCUUGcCGCgGC-GCGCCAGCAAcUCGc -3'
miRNA:   3'- -CGAGCuGCG-CGuCGUGGUCGUUcAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.