Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30745 | 5' | -56 | NC_006552.1 | + | 32350 | 0.66 | 0.724481 |
Target: 5'- gCGCaCGGCGGcUUCGCGCAcuGCGU-CGUUg -3' miRNA: 3'- -GCG-GUUGUC-AAGCGCGU--CGUAgGCGA- -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 18728 | 0.66 | 0.724481 |
Target: 5'- uGUCGACGGUauaUCGgGCAGUGgUCCGg- -3' miRNA: 3'- gCGGUUGUCA---AGCgCGUCGU-AGGCga -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 7899 | 0.66 | 0.724481 |
Target: 5'- gCGCCAGgAaa-CGCGCcacGCAUCUGCUc -3' miRNA: 3'- -GCGGUUgUcaaGCGCGu--CGUAGGCGA- -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 26312 | 0.66 | 0.713904 |
Target: 5'- gGCCAACAGcagcUCGC-CAcCAUUCGCUc -3' miRNA: 3'- gCGGUUGUCa---AGCGcGUcGUAGGCGA- -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 5422 | 0.66 | 0.713904 |
Target: 5'- uCGCCAuCAGgcugCGCGCcAGUuguucgCCGCg -3' miRNA: 3'- -GCGGUuGUCaa--GCGCG-UCGua----GGCGa -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 62638 | 0.66 | 0.703247 |
Target: 5'- uGCCAGC-GUUCGaccaGCAGCAccCCGa- -3' miRNA: 3'- gCGGUUGuCAAGCg---CGUCGUa-GGCga -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 2064 | 0.66 | 0.703247 |
Target: 5'- gCGCCGGCGucgUGCGCGGC--CUGCUg -3' miRNA: 3'- -GCGGUUGUcaaGCGCGUCGuaGGCGA- -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 44476 | 0.66 | 0.703247 |
Target: 5'- gCGCCGGCAGa-CGCcccaGGCGUuCCGCUu -3' miRNA: 3'- -GCGGUUGUCaaGCGcg--UCGUA-GGCGA- -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 43514 | 0.66 | 0.692521 |
Target: 5'- uGCCGGCGauucguaccGUgcacuccucgucUCGCGCGGCGUCC-Cg -3' miRNA: 3'- gCGGUUGU---------CA------------AGCGCGUCGUAGGcGa -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 15021 | 0.66 | 0.680658 |
Target: 5'- gCGCCAguggcuucagcacGCGGggCuGCGCAGCAggCUGUUg -3' miRNA: 3'- -GCGGU-------------UGUCaaG-CGCGUCGUa-GGCGA- -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 9148 | 0.66 | 0.669825 |
Target: 5'- cCGCCGucacccuGCGcGUagcCGCucGCGGCAUCCGCg -3' miRNA: 3'- -GCGGU-------UGU-CAa--GCG--CGUCGUAGGCGa -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 11439 | 0.67 | 0.660046 |
Target: 5'- gGCuCGGCGGgcgccUCGCGCAGCGcuacgaacUCgCGCa -3' miRNA: 3'- gCG-GUUGUCa----AGCGCGUCGU--------AG-GCGa -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 50003 | 0.67 | 0.63825 |
Target: 5'- aGCCGACGGcaCGCGCAucGCGaagCgCGCUg -3' miRNA: 3'- gCGGUUGUCaaGCGCGU--CGUa--G-GCGA- -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 59383 | 0.67 | 0.63825 |
Target: 5'- aGCCAACgauccauggAGggCGCgGCAGCGUCagGCg -3' miRNA: 3'- gCGGUUG---------UCaaGCG-CGUCGUAGg-CGa -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 26446 | 0.67 | 0.616433 |
Target: 5'- gCGCCGACuccuggGGgcCGCGCAGCcacgccacagCCGCg -3' miRNA: 3'- -GCGGUUG------UCaaGCGCGUCGua--------GGCGa -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 5608 | 0.68 | 0.573029 |
Target: 5'- gGCUGACGGUcaGCGCGGCAaCCaGCa -3' miRNA: 3'- gCGGUUGUCAagCGCGUCGUaGG-CGa -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 53290 | 0.68 | 0.573029 |
Target: 5'- gCGaUCAACGGc-CGCGCAGCccgCCGCg -3' miRNA: 3'- -GC-GGUUGUCaaGCGCGUCGua-GGCGa -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 44186 | 0.68 | 0.561204 |
Target: 5'- gCGCCGACGGUccaugucuUCGCGCucguggcgcagguGGCgAUCaCGCa -3' miRNA: 3'- -GCGGUUGUCA--------AGCGCG-------------UCG-UAG-GCGa -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 42014 | 0.68 | 0.551579 |
Target: 5'- uGCgu-CAGUUCGCGU-GCAUCUGCc -3' miRNA: 3'- gCGguuGUCAAGCGCGuCGUAGGCGa -5' |
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30745 | 5' | -56 | NC_006552.1 | + | 38365 | 0.69 | 0.530379 |
Target: 5'- uGCCAgcaGCAGUUCGCccacCAGgGUCCGg- -3' miRNA: 3'- gCGGU---UGUCAAGCGc---GUCgUAGGCga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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