miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30747 3' -61.6 NC_006552.1 + 12938 0.69 0.263915
Target:  5'- aGCUcGGcCAGCGCGCUGGccUUGGCCugGCg -3'
miRNA:   3'- -CGGuCC-GUCGCGCGGUCa-AGCCGG--CG- -5'
30747 3' -61.6 NC_006552.1 + 13302 0.66 0.41782
Target:  5'- aUCGGGCuugGGUGCcucuGCCGGUUCGGaCUGg -3'
miRNA:   3'- cGGUCCG---UCGCG----CGGUCAAGCC-GGCg -5'
30747 3' -61.6 NC_006552.1 + 13832 0.67 0.374565
Target:  5'- uGCCGGcGCgcacguucaucaGGCGCcgguacuggGCCAGguaaUCGGcCCGCa -3'
miRNA:   3'- -CGGUC-CG------------UCGCG---------CGGUCa---AGCC-GGCG- -5'
30747 3' -61.6 NC_006552.1 + 14873 0.68 0.30468
Target:  5'- cGCCAGGU-GC-UGCCGGaUCGGCacCGCu -3'
miRNA:   3'- -CGGUCCGuCGcGCGGUCaAGCCG--GCG- -5'
30747 3' -61.6 NC_006552.1 + 15112 0.66 0.426829
Target:  5'- cGCCAGGUucgccucgaacuGGCGCGCguugaacUCGucGCCGCg -3'
miRNA:   3'- -CGGUCCG------------UCGCGCGguca---AGC--CGGCG- -5'
30747 3' -61.6 NC_006552.1 + 15463 0.68 0.319303
Target:  5'- uGCCGGcGcCAGCGauacaGCCGGUugugCGGCUuGCg -3'
miRNA:   3'- -CGGUC-C-GUCGCg----CGGUCAa---GCCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 17643 0.67 0.382971
Target:  5'- aGCCAGGCgcuGGCGauCgAGUUCguuGGCgGCg -3'
miRNA:   3'- -CGGUCCG---UCGCgcGgUCAAG---CCGgCG- -5'
30747 3' -61.6 NC_006552.1 + 20265 0.67 0.386368
Target:  5'- aGCCGcauccagcuuggugcGGUAGaccuGCGCCAGcgUCucgaaGGCCGCg -3'
miRNA:   3'- -CGGU---------------CCGUCg---CGCGGUCa-AG-----CCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 20442 0.68 0.309739
Target:  5'- gGCCAGGCccugcugcacGGCgaaGCGCaGGUUCucgauuucccagguGGCCGCu -3'
miRNA:   3'- -CGGUCCG----------UCG---CGCGgUCAAG--------------CCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 20500 0.68 0.334446
Target:  5'- aCCAGGauguCGCGguUCAGaUUCGGCCGCc -3'
miRNA:   3'- cGGUCCguc-GCGC--GGUC-AAGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 21148 0.67 0.400153
Target:  5'- -aCGGGCGGCgGCGacgcgaUAGgcgcaucCGGCCGCg -3'
miRNA:   3'- cgGUCCGUCG-CGCg-----GUCaa-----GCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 22316 0.69 0.297563
Target:  5'- aCCAGcaGGUGCGCCGG-UCGGUCGa -3'
miRNA:   3'- cGGUCcgUCGCGCGGUCaAGCCGGCg -5'
30747 3' -61.6 NC_006552.1 + 22890 0.71 0.195762
Target:  5'- cGCCAGGUGGCagguucaGCCAGUU--GCCGCu -3'
miRNA:   3'- -CGGUCCGUCGcg-----CGGUCAAgcCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 24937 0.67 0.390642
Target:  5'- cGCUGGGCAGaucccaaCGCGCuuCAGgcUGGCCaGCu -3'
miRNA:   3'- -CGGUCCGUC-------GCGCG--GUCaaGCCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 25297 0.68 0.350109
Target:  5'- aCCGGGUAGCgGUGUCGG-UCGGCguccaaGCu -3'
miRNA:   3'- cGGUCCGUCG-CGCGGUCaAGCCGg-----CG- -5'
30747 3' -61.6 NC_006552.1 + 26201 0.67 0.358134
Target:  5'- gGCCAGGU-GCuuGCCGG-UCGGCauggGCg -3'
miRNA:   3'- -CGGUCCGuCGcgCGGUCaAGCCGg---CG- -5'
30747 3' -61.6 NC_006552.1 + 26230 0.7 0.233421
Target:  5'- -aCAGGUGGCgaaacuGCGCCGG-UCGGCCcaGCu -3'
miRNA:   3'- cgGUCCGUCG------CGCGGUCaAGCCGG--CG- -5'
30747 3' -61.6 NC_006552.1 + 26262 0.66 0.41782
Target:  5'- uCC-GGUAGCGuCGgCAGgaugaccgUGGCCGCg -3'
miRNA:   3'- cGGuCCGUCGC-GCgGUCaa------GCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 26342 0.68 0.311926
Target:  5'- cGUCAGGUAgaggcGCGCGCCGGUcacacUGGCauccaaGCa -3'
miRNA:   3'- -CGGUCCGU-----CGCGCGGUCAa----GCCGg-----CG- -5'
30747 3' -61.6 NC_006552.1 + 26537 0.76 0.086311
Target:  5'- cGCCGGGguGUccaGCGUCAGgcgcUCGGCCuGCg -3'
miRNA:   3'- -CGGUCCguCG---CGCGGUCa---AGCCGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.