Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 12938 | 0.69 | 0.263915 |
Target: 5'- aGCUcGGcCAGCGCGCUGGccUUGGCCugGCg -3' miRNA: 3'- -CGGuCC-GUCGCGCGGUCa-AGCCGG--CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 13302 | 0.66 | 0.41782 |
Target: 5'- aUCGGGCuugGGUGCcucuGCCGGUUCGGaCUGg -3' miRNA: 3'- cGGUCCG---UCGCG----CGGUCAAGCC-GGCg -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 13832 | 0.67 | 0.374565 |
Target: 5'- uGCCGGcGCgcacguucaucaGGCGCcgguacuggGCCAGguaaUCGGcCCGCa -3' miRNA: 3'- -CGGUC-CG------------UCGCG---------CGGUCa---AGCC-GGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 14873 | 0.68 | 0.30468 |
Target: 5'- cGCCAGGU-GC-UGCCGGaUCGGCacCGCu -3' miRNA: 3'- -CGGUCCGuCGcGCGGUCaAGCCG--GCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 15112 | 0.66 | 0.426829 |
Target: 5'- cGCCAGGUucgccucgaacuGGCGCGCguugaacUCGucGCCGCg -3' miRNA: 3'- -CGGUCCG------------UCGCGCGguca---AGC--CGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 15463 | 0.68 | 0.319303 |
Target: 5'- uGCCGGcGcCAGCGauacaGCCGGUugugCGGCUuGCg -3' miRNA: 3'- -CGGUC-C-GUCGCg----CGGUCAa---GCCGG-CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 17643 | 0.67 | 0.382971 |
Target: 5'- aGCCAGGCgcuGGCGauCgAGUUCguuGGCgGCg -3' miRNA: 3'- -CGGUCCG---UCGCgcGgUCAAG---CCGgCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 20265 | 0.67 | 0.386368 |
Target: 5'- aGCCGcauccagcuuggugcGGUAGaccuGCGCCAGcgUCucgaaGGCCGCg -3' miRNA: 3'- -CGGU---------------CCGUCg---CGCGGUCa-AG-----CCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 20442 | 0.68 | 0.309739 |
Target: 5'- gGCCAGGCccugcugcacGGCgaaGCGCaGGUUCucgauuucccagguGGCCGCu -3' miRNA: 3'- -CGGUCCG----------UCG---CGCGgUCAAG--------------CCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 20500 | 0.68 | 0.334446 |
Target: 5'- aCCAGGauguCGCGguUCAGaUUCGGCCGCc -3' miRNA: 3'- cGGUCCguc-GCGC--GGUC-AAGCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 21148 | 0.67 | 0.400153 |
Target: 5'- -aCGGGCGGCgGCGacgcgaUAGgcgcaucCGGCCGCg -3' miRNA: 3'- cgGUCCGUCG-CGCg-----GUCaa-----GCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 22316 | 0.69 | 0.297563 |
Target: 5'- aCCAGcaGGUGCGCCGG-UCGGUCGa -3' miRNA: 3'- cGGUCcgUCGCGCGGUCaAGCCGGCg -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 22890 | 0.71 | 0.195762 |
Target: 5'- cGCCAGGUGGCagguucaGCCAGUU--GCCGCu -3' miRNA: 3'- -CGGUCCGUCGcg-----CGGUCAAgcCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 24937 | 0.67 | 0.390642 |
Target: 5'- cGCUGGGCAGaucccaaCGCGCuuCAGgcUGGCCaGCu -3' miRNA: 3'- -CGGUCCGUC-------GCGCG--GUCaaGCCGG-CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 25297 | 0.68 | 0.350109 |
Target: 5'- aCCGGGUAGCgGUGUCGG-UCGGCguccaaGCu -3' miRNA: 3'- cGGUCCGUCG-CGCGGUCaAGCCGg-----CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 26201 | 0.67 | 0.358134 |
Target: 5'- gGCCAGGU-GCuuGCCGG-UCGGCauggGCg -3' miRNA: 3'- -CGGUCCGuCGcgCGGUCaAGCCGg---CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 26230 | 0.7 | 0.233421 |
Target: 5'- -aCAGGUGGCgaaacuGCGCCGG-UCGGCCcaGCu -3' miRNA: 3'- cgGUCCGUCG------CGCGGUCaAGCCGG--CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 26262 | 0.66 | 0.41782 |
Target: 5'- uCC-GGUAGCGuCGgCAGgaugaccgUGGCCGCg -3' miRNA: 3'- cGGuCCGUCGC-GCgGUCaa------GCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 26342 | 0.68 | 0.311926 |
Target: 5'- cGUCAGGUAgaggcGCGCGCCGGUcacacUGGCauccaaGCa -3' miRNA: 3'- -CGGUCCGU-----CGCGCGGUCAa----GCCGg-----CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 26537 | 0.76 | 0.086311 |
Target: 5'- cGCCGGGguGUccaGCGUCAGgcgcUCGGCCuGCg -3' miRNA: 3'- -CGGUCCguCG---CGCGGUCa---AGCCGG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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