miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30747 3' -61.6 NC_006552.1 + 829 0.66 0.458299
Target:  5'- gGCCGGGUauaggucauuguccaGuacucuGCGCGCCuGGUUUGcGCUGCc -3'
miRNA:   3'- -CGGUCCG---------------U------CGCGCGG-UCAAGC-CGGCG- -5'
30747 3' -61.6 NC_006552.1 + 2050 0.72 0.181313
Target:  5'- -aCAGGCgcuugAGCGCGCCGGcgucgugcgCGGCCuGCu -3'
miRNA:   3'- cgGUCCG-----UCGCGCGGUCaa-------GCCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 3251 0.69 0.283719
Target:  5'- cGCC--GCAGUGCGCCGGa--GGUCGUu -3'
miRNA:   3'- -CGGucCGUCGCGCGGUCaagCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 4250 0.67 0.397545
Target:  5'- cCCAGGCAG-GCGCaUAGUUucccgcuuuggcggUGGuuGCg -3'
miRNA:   3'- cGGUCCGUCgCGCG-GUCAA--------------GCCggCG- -5'
30747 3' -61.6 NC_006552.1 + 4732 0.7 0.233421
Target:  5'- gGCCgAGGCGGCGUcuccugcaCCAGcUUCGGCgGUg -3'
miRNA:   3'- -CGG-UCCGUCGCGc-------GGUC-AAGCCGgCG- -5'
30747 3' -61.6 NC_006552.1 + 4807 0.67 0.358134
Target:  5'- aCCugcGGCGGgggcgaugcgcaCGCGCaCAGggCGGUCGCg -3'
miRNA:   3'- cGGu--CCGUC------------GCGCG-GUCaaGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 4941 0.66 0.435953
Target:  5'- uGUCGcGCuGCGCgGUCAGcUCGGCCaGCu -3'
miRNA:   3'- -CGGUcCGuCGCG-CGGUCaAGCCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 5075 0.67 0.382125
Target:  5'- gGCCAGcCAGCGCuaucgcaGCCAGaaCGG-CGCc -3'
miRNA:   3'- -CGGUCcGUCGCG-------CGGUCaaGCCgGCG- -5'
30747 3' -61.6 NC_006552.1 + 5427 0.81 0.03991
Target:  5'- aUCAGGCuGCGCGCCAGUuguUCG-CCGCg -3'
miRNA:   3'- cGGUCCGuCGCGCGGUCA---AGCcGGCG- -5'
30747 3' -61.6 NC_006552.1 + 5603 0.68 0.319303
Target:  5'- gGCCAGGCugacggucAGCGCGgCaaccagcacgcGGUUaCGGCUGUu -3'
miRNA:   3'- -CGGUCCG--------UCGCGCgG-----------UCAA-GCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 7141 0.69 0.27699
Target:  5'- cCCAGGCcaucgacaGGCGCGCCAcgcugUUGGaCGCa -3'
miRNA:   3'- cGGUCCG--------UCGCGCGGUca---AGCCgGCG- -5'
30747 3' -61.6 NC_006552.1 + 7900 0.67 0.365465
Target:  5'- cGCCAGGaaaCGCGCCAcgcaucuGcUCGGCCa- -3'
miRNA:   3'- -CGGUCCgucGCGCGGU-------CaAGCCGGcg -5'
30747 3' -61.6 NC_006552.1 + 8140 0.72 0.182714
Target:  5'- cGCCAGGUGGuCGCGCaguaucgCGGcccccuccugcgcaUCGGCCGCg -3'
miRNA:   3'- -CGGUCCGUC-GCGCG-------GUCa-------------AGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 8645 0.75 0.118591
Target:  5'- cGCCAaguuuccaacuucGGCAGCaguuucgGCGCCAGaUCaGCCGCa -3'
miRNA:   3'- -CGGU-------------CCGUCG-------CGCGGUCaAGcCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 10840 0.77 0.073288
Target:  5'- cGCCGGGCugcGGCGCuGCCGacucUUCGGCUGCc -3'
miRNA:   3'- -CGGUCCG---UCGCG-CGGUc---AAGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 11048 0.73 0.155227
Target:  5'- aCCAGGCGGC-CGCCGGgcuucagcaGGCUGUa -3'
miRNA:   3'- cGGUCCGUCGcGCGGUCaag------CCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 11892 0.68 0.32681
Target:  5'- uCCAGGC-GCGCgGCCAauuucUUCaGGCCGUc -3'
miRNA:   3'- cGGUCCGuCGCG-CGGUc----AAG-CCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 11930 0.68 0.350109
Target:  5'- cGCCAucUGGCGCGCCAGgcucgcuaggUCGGagCGCa -3'
miRNA:   3'- -CGGUccGUCGCGCGGUCa---------AGCCg-GCG- -5'
30747 3' -61.6 NC_006552.1 + 12172 0.75 0.113025
Target:  5'- gGCCAGGUuguucaugguGGCG-GCCAGUgccuugUCGGaCCGCg -3'
miRNA:   3'- -CGGUCCG----------UCGCgCGGUCA------AGCC-GGCG- -5'
30747 3' -61.6 NC_006552.1 + 12388 0.66 0.442406
Target:  5'- gGCCugcgcgucGGCGGUGuCGCCugucaccagcuuacGGaaugcUUCGGCCGCc -3'
miRNA:   3'- -CGGu-------CCGUCGC-GCGG--------------UC-----AAGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.