miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30747 3' -61.6 NC_006552.1 + 41408 1.13 0.000151
Target:  5'- aGCCAGGCAGCGCGCCAGUUCGGCCGCg -3'
miRNA:   3'- -CGGUCCGUCGCGCGGUCAAGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 5427 0.81 0.03991
Target:  5'- aUCAGGCuGCGCGCCAGUuguUCG-CCGCg -3'
miRNA:   3'- cGGUCCGuCGCGCGGUCA---AGCcGGCG- -5'
30747 3' -61.6 NC_006552.1 + 61373 0.79 0.057231
Target:  5'- aGCCGGGCcauguuuuGGCGCGCCGG--CGGCgGCu -3'
miRNA:   3'- -CGGUCCG--------UCGCGCGGUCaaGCCGgCG- -5'
30747 3' -61.6 NC_006552.1 + 10840 0.77 0.073288
Target:  5'- cGCCGGGCugcGGCGCuGCCGacucUUCGGCUGCc -3'
miRNA:   3'- -CGGUCCG---UCGCG-CGGUc---AAGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 26537 0.76 0.086311
Target:  5'- cGCCGGGguGUccaGCGUCAGgcgcUCGGCCuGCg -3'
miRNA:   3'- -CGGUCCguCG---CGCGGUCa---AGCCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 12172 0.75 0.113025
Target:  5'- gGCCAGGUuguucaugguGGCG-GCCAGUgccuugUCGGaCCGCg -3'
miRNA:   3'- -CGGUCCG----------UCGCgCGGUCA------AGCC-GGCG- -5'
30747 3' -61.6 NC_006552.1 + 8645 0.75 0.118591
Target:  5'- cGCCAaguuuccaacuucGGCAGCaguuucgGCGCCAGaUCaGCCGCa -3'
miRNA:   3'- -CGGU-------------CCGUCG-------CGCGGUCaAGcCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 11048 0.73 0.155227
Target:  5'- aCCAGGCGGC-CGCCGGgcuucagcaGGCUGUa -3'
miRNA:   3'- cGGUCCGUCGcGCGGUCaag------CCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 34148 0.73 0.155227
Target:  5'- cCCAGGCu-UGCGCCAGagccUGGCCGCc -3'
miRNA:   3'- cGGUCCGucGCGCGGUCaa--GCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 29304 0.72 0.172212
Target:  5'- cCCAcGGCGGCgGCGCaauGUUgcCGGCCGCc -3'
miRNA:   3'- cGGU-CCGUCG-CGCGgu-CAA--GCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 28028 0.72 0.172212
Target:  5'- ---cGGCGGCGCGCCGGUcUUGGUCa- -3'
miRNA:   3'- cgguCCGUCGCGCGGUCA-AGCCGGcg -5'
30747 3' -61.6 NC_006552.1 + 2050 0.72 0.181313
Target:  5'- -aCAGGCgcuugAGCGCGCCGGcgucgugcgCGGCCuGCu -3'
miRNA:   3'- cgGUCCG-----UCGCGCGGUCaa-------GCCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 8140 0.72 0.182714
Target:  5'- cGCCAGGUGGuCGCGCaguaucgCGGcccccuccugcgcaUCGGCCGCg -3'
miRNA:   3'- -CGGUCCGUC-GCGCG-------GUCa-------------AGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 32142 0.72 0.183183
Target:  5'- uGCCGGuGCAuGCGCGCCAuuccggcagcuccacGUccagcaccUCGGCCGa -3'
miRNA:   3'- -CGGUC-CGU-CGCGCGGU---------------CA--------AGCCGGCg -5'
30747 3' -61.6 NC_006552.1 + 22890 0.71 0.195762
Target:  5'- cGCCAGGUGGCagguucaGCCAGUU--GCCGCu -3'
miRNA:   3'- -CGGUCCGUCGcg-----CGGUCAAgcCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 53994 0.71 0.200797
Target:  5'- gGCCAGGC-GCGUgGCCcuGGcccUGGCCGCg -3'
miRNA:   3'- -CGGUCCGuCGCG-CGG--UCaa-GCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 4732 0.7 0.233421
Target:  5'- gGCCgAGGCGGCGUcuccugcaCCAGcUUCGGCgGUg -3'
miRNA:   3'- -CGG-UCCGUCGCGc-------GGUC-AAGCCGgCG- -5'
30747 3' -61.6 NC_006552.1 + 26230 0.7 0.233421
Target:  5'- -aCAGGUGGCgaaacuGCGCCGG-UCGGCCcaGCu -3'
miRNA:   3'- cgGUCCGUCG------CGCGGUCaAGCCGG--CG- -5'
30747 3' -61.6 NC_006552.1 + 49008 0.7 0.233421
Target:  5'- aGCCcGGCGGCGCGagcGUUCaGCCGa -3'
miRNA:   3'- -CGGuCCGUCGCGCgguCAAGcCGGCg -5'
30747 3' -61.6 NC_006552.1 + 31402 0.7 0.233421
Target:  5'- cGUC-GGCGGCGcCGCCAGUggUGGUcuuCGCg -3'
miRNA:   3'- -CGGuCCGUCGC-GCGGUCAa-GCCG---GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.