Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30757 | 3' | -55.9 | NC_006552.1 | + | 38951 | 0.69 | 0.539873 |
Target: 5'- uGCGGcCGGacGCCAGCGCgaUGuuGUGCGCc -3' miRNA: 3'- uCGUC-GUC--CGGUCGCG--GCuuUAUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 15609 | 0.69 | 0.539873 |
Target: 5'- gGGCGGCuagcucaacccGGCCAGCGgCGuucuggugGCGCu -3' miRNA: 3'- -UCGUCGu----------CCGGUCGCgGCuuua----UGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 25408 | 0.69 | 0.53881 |
Target: 5'- uAGCAGCAGGugcugccgucCCAGCgaacaggGCCagGAAAUACGa -3' miRNA: 3'- -UCGUCGUCC----------GGUCG-------CGG--CUUUAUGCg -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 60157 | 0.69 | 0.53881 |
Target: 5'- uGCGGCAgaucgccGGCCAGCacuuccGCCGGAuc-CGCc -3' miRNA: 3'- uCGUCGU-------CCGGUCG------CGGCUUuauGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 27847 | 0.69 | 0.535623 |
Target: 5'- aGGCcGUAGccguccaccuugauGCCGGCGUCGAuguucacgcccauGAUGCGCa -3' miRNA: 3'- -UCGuCGUC--------------CGGUCGCGGCU-------------UUAUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 38222 | 0.69 | 0.533503 |
Target: 5'- cGCAGCAGaucauuggacagguaGgCGGCGCCGGucUGCGg -3' miRNA: 3'- uCGUCGUC---------------CgGUCGCGGCUuuAUGCg -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 13947 | 0.69 | 0.529271 |
Target: 5'- cGCGucGCGGGCCA-CGUCGAuGUAgGCu -3' miRNA: 3'- uCGU--CGUCCGGUcGCGGCUuUAUgCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 28634 | 0.69 | 0.529271 |
Target: 5'- cAGCGGCAGGUaaCGGCGgCCG---UAgGCa -3' miRNA: 3'- -UCGUCGUCCG--GUCGC-GGCuuuAUgCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 51705 | 0.69 | 0.518745 |
Target: 5'- cGCGGCAaGaCCAGCGaCGAGAUugcCGCg -3' miRNA: 3'- uCGUCGUcC-GGUCGCgGCUUUAu--GCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 44416 | 0.69 | 0.508304 |
Target: 5'- cGCuGCcGGCCGGCGaaaCCGGcucgAGUACGUg -3' miRNA: 3'- uCGuCGuCCGGUCGC---GGCU----UUAUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 31848 | 0.69 | 0.508304 |
Target: 5'- cGCcGCAGGUCGGagucggggcgcuCGCCGAAGUAaGCc -3' miRNA: 3'- uCGuCGUCCGGUC------------GCGGCUUUAUgCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 31276 | 0.69 | 0.487696 |
Target: 5'- -uCGGCAGGCCGGUaGCCGugucGAUgaAUGCa -3' miRNA: 3'- ucGUCGUCCGGUCG-CGGCu---UUA--UGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 15006 | 0.7 | 0.447725 |
Target: 5'- uGGCGGUAGGCUucGGCGCC--AGUggcuucagcACGCg -3' miRNA: 3'- -UCGUCGUCCGG--UCGCGGcuUUA---------UGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 53797 | 0.7 | 0.447725 |
Target: 5'- uGGCAccgggucguGCucuuuGGCCGGCugGCCGAAAUcgcaGCGCa -3' miRNA: 3'- -UCGU---------CGu----CCGGUCG--CGGCUUUA----UGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 30562 | 0.7 | 0.438018 |
Target: 5'- cGGCcccGCcGGUccaCAGCGCCGGGAUugGUa -3' miRNA: 3'- -UCGu--CGuCCG---GUCGCGGCUUUAugCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 48657 | 0.7 | 0.438018 |
Target: 5'- cGGaAGCGauGGCCAuucaucGCGCCGAGAucUACGCc -3' miRNA: 3'- -UCgUCGU--CCGGU------CGCGGCUUU--AUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 9635 | 0.71 | 0.418971 |
Target: 5'- aGGCGGCA-GCCucaCGCUGAuuUGCGCu -3' miRNA: 3'- -UCGUCGUcCGGuc-GCGGCUuuAUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 56858 | 0.71 | 0.418971 |
Target: 5'- cGGCAGCGccgcGGCgAGCGgCGA---ACGCa -3' miRNA: 3'- -UCGUCGU----CCGgUCGCgGCUuuaUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 2644 | 0.71 | 0.400436 |
Target: 5'- uGGCGGCccuucuGGGCUagggaccgcgcGGCGCCGAucaACGCu -3' miRNA: 3'- -UCGUCG------UCCGG-----------UCGCGGCUuuaUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 12186 | 0.71 | 0.400436 |
Target: 5'- uGGUGGC-GGCCAGUGCCuugucGGAccGCGCa -3' miRNA: 3'- -UCGUCGuCCGGUCGCGG-----CUUuaUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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