miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30757 3' -55.9 NC_006552.1 + 2052 0.67 0.626612
Target:  5'- aGGCgcuugAGCGcGCCGGCGUCG---UGCGCg -3'
miRNA:   3'- -UCG-----UCGUcCGGUCGCGGCuuuAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 47647 0.67 0.626612
Target:  5'- cGGCAGCAaagcguGGCCGGCuGUCGGGAUcucAgGUc -3'
miRNA:   3'- -UCGUCGU------CCGGUCG-CGGCUUUA---UgCG- -5'
30757 3' -55.9 NC_006552.1 + 43171 0.67 0.626612
Target:  5'- gAGCuuucGGUAGGCCAgGUGCUGGucGUAgGCc -3'
miRNA:   3'- -UCG----UCGUCCGGU-CGCGGCUu-UAUgCG- -5'
30757 3' -55.9 NC_006552.1 + 21352 0.67 0.626612
Target:  5'- ---uGUuGGUCGGCGCCGAuucgACGCu -3'
miRNA:   3'- ucguCGuCCGGUCGCGGCUuua-UGCG- -5'
30757 3' -55.9 NC_006552.1 + 5066 0.67 0.625517
Target:  5'- uGGCcacCAGGCCAGCcagcgcuaucgcaGCCaGAAcgGCGCc -3'
miRNA:   3'- -UCGuc-GUCCGGUCG-------------CGG-CUUuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 32450 0.67 0.624421
Target:  5'- cGGCGGaucaggucGGCCAGCGucauaccgcgccaCCGAacuggucGAUGCGCg -3'
miRNA:   3'- -UCGUCgu------CCGGUCGC-------------GGCU-------UUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 48863 0.67 0.615659
Target:  5'- uGGCuagaaGGuCAGGCCA-CGCCGGugcugcUGCGCa -3'
miRNA:   3'- -UCG-----UC-GUCCGGUcGCGGCUuu----AUGCG- -5'
30757 3' -55.9 NC_006552.1 + 8662 0.67 0.615659
Target:  5'- cGGCAGCAGuuUCGGCGCCaGAucagcCGCa -3'
miRNA:   3'- -UCGUCGUCc-GGUCGCGG-CUuuau-GCG- -5'
30757 3' -55.9 NC_006552.1 + 50111 0.67 0.604721
Target:  5'- cGCAGCAcGGCgGcGCGuuGAAAgcUACGg -3'
miRNA:   3'- uCGUCGU-CCGgU-CGCggCUUU--AUGCg -5'
30757 3' -55.9 NC_006552.1 + 26736 0.67 0.604721
Target:  5'- uGCAGUGGGCUu-UGCCaGAGUugGCg -3'
miRNA:   3'- uCGUCGUCCGGucGCGGcUUUAugCG- -5'
30757 3' -55.9 NC_006552.1 + 31430 0.68 0.593805
Target:  5'- cGCGGUgagagugaccGGGCCAGCGauCCGGGAcgACGa -3'
miRNA:   3'- uCGUCG----------UCCGGUCGC--GGCUUUa-UGCg -5'
30757 3' -55.9 NC_006552.1 + 39301 0.68 0.593805
Target:  5'- aAGCGGCAGGCCucccAGuCGUCGc----CGCa -3'
miRNA:   3'- -UCGUCGUCCGG----UC-GCGGCuuuauGCG- -5'
30757 3' -55.9 NC_006552.1 + 51526 0.68 0.582922
Target:  5'- --aGGCAGGCCAGaucaucgaCGCCGAGGcgaaGCg -3'
miRNA:   3'- ucgUCGUCCGGUC--------GCGGCUUUaug-CG- -5'
30757 3' -55.9 NC_006552.1 + 14119 0.68 0.582922
Target:  5'- cGCGcGCAu-CCGGCGCCGucauguGAGUGCGCu -3'
miRNA:   3'- uCGU-CGUccGGUCGCGGC------UUUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 57466 0.68 0.572079
Target:  5'- uGCGGCGGaGgUGGCGCCGG--UACGg -3'
miRNA:   3'- uCGUCGUC-CgGUCGCGGCUuuAUGCg -5'
30757 3' -55.9 NC_006552.1 + 53764 0.68 0.572079
Target:  5'- aAGCAGaCcGGCCAGCaGCaGGA--GCGCa -3'
miRNA:   3'- -UCGUC-GuCCGGUCG-CGgCUUuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 61989 0.68 0.572079
Target:  5'- uGCAGCA-GCgAG-GCCGAAcucUGCGCg -3'
miRNA:   3'- uCGUCGUcCGgUCgCGGCUUu--AUGCG- -5'
30757 3' -55.9 NC_006552.1 + 32134 0.68 0.572079
Target:  5'- cAGCGGCuuGCCGGUGC----AUGCGCg -3'
miRNA:   3'- -UCGUCGucCGGUCGCGgcuuUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 9913 0.68 0.562362
Target:  5'- uGGaUAGCAucGGUCAGCGCCuugccggucuuuugcGAAUACGCg -3'
miRNA:   3'- -UC-GUCGU--CCGGUCGCGGc--------------UUUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 38951 0.69 0.539873
Target:  5'- uGCGGcCGGacGCCAGCGCgaUGuuGUGCGCc -3'
miRNA:   3'- uCGUC-GUC--CGGUCGCG--GCuuUAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.