miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30757 3' -55.9 NC_006552.1 + 53797 0.7 0.447725
Target:  5'- uGGCAccgggucguGCucuuuGGCCGGCugGCCGAAAUcgcaGCGCa -3'
miRNA:   3'- -UCGU---------CGu----CCGGUCG--CGGCUUUA----UGCG- -5'
30757 3' -55.9 NC_006552.1 + 15006 0.7 0.447725
Target:  5'- uGGCGGUAGGCUucGGCGCC--AGUggcuucagcACGCg -3'
miRNA:   3'- -UCGUCGUCCGG--UCGCGGcuUUA---------UGCG- -5'
30757 3' -55.9 NC_006552.1 + 31276 0.69 0.487696
Target:  5'- -uCGGCAGGCCGGUaGCCGugucGAUgaAUGCa -3'
miRNA:   3'- ucGUCGUCCGGUCG-CGGCu---UUA--UGCG- -5'
30757 3' -55.9 NC_006552.1 + 31848 0.69 0.508304
Target:  5'- cGCcGCAGGUCGGagucggggcgcuCGCCGAAGUAaGCc -3'
miRNA:   3'- uCGuCGUCCGGUC------------GCGGCUUUAUgCG- -5'
30757 3' -55.9 NC_006552.1 + 44416 0.69 0.508304
Target:  5'- cGCuGCcGGCCGGCGaaaCCGGcucgAGUACGUg -3'
miRNA:   3'- uCGuCGuCCGGUCGC---GGCU----UUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 51705 0.69 0.518745
Target:  5'- cGCGGCAaGaCCAGCGaCGAGAUugcCGCg -3'
miRNA:   3'- uCGUCGUcC-GGUCGCgGCUUUAu--GCG- -5'
30757 3' -55.9 NC_006552.1 + 13947 0.69 0.529271
Target:  5'- cGCGucGCGGGCCA-CGUCGAuGUAgGCu -3'
miRNA:   3'- uCGU--CGUCCGGUcGCGGCUuUAUgCG- -5'
30757 3' -55.9 NC_006552.1 + 28634 0.69 0.529271
Target:  5'- cAGCGGCAGGUaaCGGCGgCCG---UAgGCa -3'
miRNA:   3'- -UCGUCGUCCG--GUCGC-GGCuuuAUgCG- -5'
30757 3' -55.9 NC_006552.1 + 38222 0.69 0.533503
Target:  5'- cGCAGCAGaucauuggacagguaGgCGGCGCCGGucUGCGg -3'
miRNA:   3'- uCGUCGUC---------------CgGUCGCGGCUuuAUGCg -5'
30757 3' -55.9 NC_006552.1 + 27847 0.69 0.535623
Target:  5'- aGGCcGUAGccguccaccuugauGCCGGCGUCGAuguucacgcccauGAUGCGCa -3'
miRNA:   3'- -UCGuCGUC--------------CGGUCGCGGCU-------------UUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 60157 0.69 0.53881
Target:  5'- uGCGGCAgaucgccGGCCAGCacuuccGCCGGAuc-CGCc -3'
miRNA:   3'- uCGUCGU-------CCGGUCG------CGGCUUuauGCG- -5'
30757 3' -55.9 NC_006552.1 + 25408 0.69 0.53881
Target:  5'- uAGCAGCAGGugcugccgucCCAGCgaacaggGCCagGAAAUACGa -3'
miRNA:   3'- -UCGUCGUCC----------GGUCG-------CGG--CUUUAUGCg -5'
30757 3' -55.9 NC_006552.1 + 20282 0.69 0.539873
Target:  5'- uGCGGUAGaccugcGCCAGCGUcuCGAAGgcCGCg -3'
miRNA:   3'- uCGUCGUC------CGGUCGCG--GCUUUauGCG- -5'
30757 3' -55.9 NC_006552.1 + 15609 0.69 0.539873
Target:  5'- gGGCGGCuagcucaacccGGCCAGCGgCGuucuggugGCGCu -3'
miRNA:   3'- -UCGUCGu----------CCGGUCGCgGCuuua----UGCG- -5'
30757 3' -55.9 NC_006552.1 + 38951 0.69 0.539873
Target:  5'- uGCGGcCGGacGCCAGCGCgaUGuuGUGCGCc -3'
miRNA:   3'- uCGUC-GUC--CGGUCGCG--GCuuUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 9913 0.68 0.562362
Target:  5'- uGGaUAGCAucGGUCAGCGCCuugccggucuuuugcGAAUACGCg -3'
miRNA:   3'- -UC-GUCGU--CCGGUCGCGGc--------------UUUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 57466 0.68 0.572079
Target:  5'- uGCGGCGGaGgUGGCGCCGG--UACGg -3'
miRNA:   3'- uCGUCGUC-CgGUCGCGGCUuuAUGCg -5'
30757 3' -55.9 NC_006552.1 + 53764 0.68 0.572079
Target:  5'- aAGCAGaCcGGCCAGCaGCaGGA--GCGCa -3'
miRNA:   3'- -UCGUC-GuCCGGUCG-CGgCUUuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 32134 0.68 0.572079
Target:  5'- cAGCGGCuuGCCGGUGC----AUGCGCg -3'
miRNA:   3'- -UCGUCGucCGGUCGCGgcuuUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 61989 0.68 0.572079
Target:  5'- uGCAGCA-GCgAG-GCCGAAcucUGCGCg -3'
miRNA:   3'- uCGUCGUcCGgUCgCGGCUUu--AUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.