miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30757 3' -55.9 NC_006552.1 + 21352 0.67 0.626612
Target:  5'- ---uGUuGGUCGGCGCCGAuucgACGCu -3'
miRNA:   3'- ucguCGuCCGGUCGCGGCUuua-UGCG- -5'
30757 3' -55.9 NC_006552.1 + 21913 0.66 0.692082
Target:  5'- -cCAGCAGcGCCuGCacgGCCu-GAUGCGCg -3'
miRNA:   3'- ucGUCGUC-CGGuCG---CGGcuUUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 22047 0.83 0.065257
Target:  5'- uGGCGGCcuGGCCAGUGCUGucgcuGAUGCGCg -3'
miRNA:   3'- -UCGUCGu-CCGGUCGCGGCu----UUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 25213 0.66 0.713561
Target:  5'- uGGuCAGCA-GCgCGGCGCCGuug-ACGUu -3'
miRNA:   3'- -UC-GUCGUcCG-GUCGCGGCuuuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 25408 0.69 0.53881
Target:  5'- uAGCAGCAGGugcugccgucCCAGCgaacaggGCCagGAAAUACGa -3'
miRNA:   3'- -UCGUCGUCC----------GGUCG-------CGG--CUUUAUGCg -5'
30757 3' -55.9 NC_006552.1 + 25630 0.67 0.659461
Target:  5'- cAGUGGcCAGGUCGGCGgCCauuucuuUGCGCa -3'
miRNA:   3'- -UCGUC-GUCCGGUCGC-GGcuuu---AUGCG- -5'
30757 3' -55.9 NC_006552.1 + 26130 0.79 0.118512
Target:  5'- aGGUGGUAGGCCAGgGCCucgGAGAaGCGCa -3'
miRNA:   3'- -UCGUCGUCCGGUCgCGG---CUUUaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 26193 0.66 0.670374
Target:  5'- cGcCAGUAGGCCAGgugcuUGCCGGucggcAUGgGCg -3'
miRNA:   3'- uC-GUCGUCCGGUC-----GCGGCUu----UAUgCG- -5'
30757 3' -55.9 NC_006552.1 + 26525 0.75 0.233281
Target:  5'- cAGCAGC-GG-CGGCGCCGggGUguccagcgucagGCGCu -3'
miRNA:   3'- -UCGUCGuCCgGUCGCGGCuuUA------------UGCG- -5'
30757 3' -55.9 NC_006552.1 + 26736 0.67 0.604721
Target:  5'- uGCAGUGGGCUu-UGCCaGAGUugGCg -3'
miRNA:   3'- uCGUCGUCCGGucGCGGcUUUAugCG- -5'
30757 3' -55.9 NC_006552.1 + 27371 0.66 0.713561
Target:  5'- gAGcCGGCAGaCCAGCagGCCGAAcuGUuuGCg -3'
miRNA:   3'- -UC-GUCGUCcGGUCG--CGGCUU--UAugCG- -5'
30757 3' -55.9 NC_006552.1 + 27847 0.69 0.535623
Target:  5'- aGGCcGUAGccguccaccuugauGCCGGCGUCGAuguucacgcccauGAUGCGCa -3'
miRNA:   3'- -UCGuCGUC--------------CGGUCGCGGCU-------------UUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 28634 0.69 0.529271
Target:  5'- cAGCGGCAGGUaaCGGCGgCCG---UAgGCa -3'
miRNA:   3'- -UCGUCGUCCG--GUCGC-GGCuuuAUgCG- -5'
30757 3' -55.9 NC_006552.1 + 28737 0.67 0.648523
Target:  5'- gGGaAGCcGGCCGGCGgCGAAGgcAUGCc -3'
miRNA:   3'- -UCgUCGuCCGGUCGCgGCUUUa-UGCG- -5'
30757 3' -55.9 NC_006552.1 + 30088 0.66 0.724187
Target:  5'- gGGUAGCAGGCUGGCcaGCCuGGuccACGa -3'
miRNA:   3'- -UCGUCGUCCGGUCG--CGG-CUuuaUGCg -5'
30757 3' -55.9 NC_006552.1 + 30562 0.7 0.438018
Target:  5'- cGGCcccGCcGGUccaCAGCGCCGGGAUugGUa -3'
miRNA:   3'- -UCGu--CGuCCG---GUCGCGGCUUUAugCG- -5'
30757 3' -55.9 NC_006552.1 + 31276 0.69 0.487696
Target:  5'- -uCGGCAGGCCGGUaGCCGugucGAUgaAUGCa -3'
miRNA:   3'- ucGUCGUCCGGUCG-CGGCu---UUA--UGCG- -5'
30757 3' -55.9 NC_006552.1 + 31430 0.68 0.593805
Target:  5'- cGCGGUgagagugaccGGGCCAGCGauCCGGGAcgACGa -3'
miRNA:   3'- uCGUCG----------UCCGGUCGC--GGCUUUa-UGCg -5'
30757 3' -55.9 NC_006552.1 + 31848 0.69 0.508304
Target:  5'- cGCcGCAGGUCGGagucggggcgcuCGCCGAAGUAaGCc -3'
miRNA:   3'- uCGuCGUCCGGUC------------GCGGCUUUAUgCG- -5'
30757 3' -55.9 NC_006552.1 + 31891 0.73 0.300793
Target:  5'- aAGCGGCuucGGCCAGCGCg-----GCGCg -3'
miRNA:   3'- -UCGUCGu--CCGGUCGCGgcuuuaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.