miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30757 3' -55.9 NC_006552.1 + 2052 0.67 0.626612
Target:  5'- aGGCgcuugAGCGcGCCGGCGUCG---UGCGCg -3'
miRNA:   3'- -UCG-----UCGUcCGGUCGCGGCuuuAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 2644 0.71 0.400436
Target:  5'- uGGCGGCccuucuGGGCUagggaccgcgcGGCGCCGAucaACGCu -3'
miRNA:   3'- -UCGUCG------UCCGG-----------UCGCGGCUuuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 3573 0.66 0.692082
Target:  5'- cAGguGCuGGCCgAGcCGCCG----GCGCc -3'
miRNA:   3'- -UCguCGuCCGG-UC-GCGGCuuuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 5066 0.67 0.625517
Target:  5'- uGGCcacCAGGCCAGCcagcgcuaucgcaGCCaGAAcgGCGCc -3'
miRNA:   3'- -UCGuc-GUCCGGUCG-------------CGG-CUUuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 8420 0.66 0.692082
Target:  5'- gGGCu-CAGGCC-GCGCC-AGGcGCGCa -3'
miRNA:   3'- -UCGucGUCCGGuCGCGGcUUUaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 8662 0.67 0.615659
Target:  5'- cGGCAGCAGuuUCGGCGCCaGAucagcCGCa -3'
miRNA:   3'- -UCGUCGUCc-GGUCGCGG-CUuuau-GCG- -5'
30757 3' -55.9 NC_006552.1 + 9520 0.72 0.331745
Target:  5'- cGCAGCAGGUCAcccacGCGCCGGccAAU-UGCc -3'
miRNA:   3'- uCGUCGUCCGGU-----CGCGGCU--UUAuGCG- -5'
30757 3' -55.9 NC_006552.1 + 9635 0.71 0.418971
Target:  5'- aGGCGGCA-GCCucaCGCUGAuuUGCGCu -3'
miRNA:   3'- -UCGUCGUcCGGuc-GCGGCUuuAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 9913 0.68 0.562362
Target:  5'- uGGaUAGCAucGGUCAGCGCCuugccggucuuuugcGAAUACGCg -3'
miRNA:   3'- -UC-GUCGU--CCGGUCGCGGc--------------UUUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 11332 0.66 0.670374
Target:  5'- cGGCGGCGucgauGGCUuccucggugacGGCgGCCGAGGUugGg -3'
miRNA:   3'- -UCGUCGU-----CCGG-----------UCG-CGGCUUUAugCg -5'
30757 3' -55.9 NC_006552.1 + 12186 0.71 0.400436
Target:  5'- uGGUGGC-GGCCAGUGCCuugucGGAccGCGCa -3'
miRNA:   3'- -UCGUCGuCCGGUCGCGG-----CUUuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 12965 0.74 0.271431
Target:  5'- uGGCGGUgcguucgAGGCCAGCaGCCGAcAUcACGUa -3'
miRNA:   3'- -UCGUCG-------UCCGGUCG-CGGCUuUA-UGCG- -5'
30757 3' -55.9 NC_006552.1 + 13947 0.69 0.529271
Target:  5'- cGCGucGCGGGCCA-CGUCGAuGUAgGCu -3'
miRNA:   3'- uCGU--CGUCCGGUcGCGGCUuUAUgCG- -5'
30757 3' -55.9 NC_006552.1 + 14119 0.68 0.582922
Target:  5'- cGCGcGCAu-CCGGCGCCGucauguGAGUGCGCu -3'
miRNA:   3'- uCGU-CGUccGGUCGCGGC------UUUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 14760 0.67 0.648523
Target:  5'- uGCGGCAuGUCGGCGCgaGGGAUGCcCa -3'
miRNA:   3'- uCGUCGUcCGGUCGCGg-CUUUAUGcG- -5'
30757 3' -55.9 NC_006552.1 + 15006 0.7 0.447725
Target:  5'- uGGCGGUAGGCUucGGCGCC--AGUggcuucagcACGCg -3'
miRNA:   3'- -UCGUCGUCCGG--UCGCGGcuUUA---------UGCG- -5'
30757 3' -55.9 NC_006552.1 + 15609 0.69 0.539873
Target:  5'- gGGCGGCuagcucaacccGGCCAGCGgCGuucuggugGCGCu -3'
miRNA:   3'- -UCGUCGu----------CCGGUCGCgGCuuua----UGCG- -5'
30757 3' -55.9 NC_006552.1 + 16808 0.66 0.723129
Target:  5'- cAGguGCcaacgcuGGaGCCAGCGCCcGA---ACGCc -3'
miRNA:   3'- -UCguCG-------UC-CGGUCGCGG-CUuuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 17704 0.66 0.702856
Target:  5'- ---uGUAGaGCCGcGCGCUGAuuUGCGCc -3'
miRNA:   3'- ucguCGUC-CGGU-CGCGGCUuuAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 20282 0.69 0.539873
Target:  5'- uGCGGUAGaccugcGCCAGCGUcuCGAAGgcCGCg -3'
miRNA:   3'- uCGUCGUC------CGGUCGCG--GCUUUauGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.