miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30757 3' -55.9 NC_006552.1 + 41152 0.66 0.724187
Target:  5'- cGCAGCGcuGGUCGcCGuuGAAcaGCGCa -3'
miRNA:   3'- uCGUCGU--CCGGUcGCggCUUuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 9520 0.72 0.331745
Target:  5'- cGCAGCAGGUCAcccacGCGCCGGccAAU-UGCc -3'
miRNA:   3'- uCGUCGUCCGGU-----CGCGGCU--UUAuGCG- -5'
30757 3' -55.9 NC_006552.1 + 45378 0.72 0.358997
Target:  5'- uGGCAGCGcGGCCcgggcucuugcucGGCGCCGAcgaauuccccgcccgGGgccgGCGCa -3'
miRNA:   3'- -UCGUCGU-CCGG-------------UCGCGGCU---------------UUa---UGCG- -5'
30757 3' -55.9 NC_006552.1 + 12186 0.71 0.400436
Target:  5'- uGGUGGC-GGCCAGUGCCuugucGGAccGCGCa -3'
miRNA:   3'- -UCGUCGuCCGGUCGCGG-----CUUuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 2644 0.71 0.400436
Target:  5'- uGGCGGCccuucuGGGCUagggaccgcgcGGCGCCGAucaACGCu -3'
miRNA:   3'- -UCGUCG------UCCGG-----------UCGCGGCUuuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 9635 0.71 0.418971
Target:  5'- aGGCGGCA-GCCucaCGCUGAuuUGCGCu -3'
miRNA:   3'- -UCGUCGUcCGGuc-GCGGCUuuAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 56858 0.71 0.418971
Target:  5'- cGGCAGCGccgcGGCgAGCGgCGA---ACGCa -3'
miRNA:   3'- -UCGUCGU----CCGgUCGCgGCUuuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 48657 0.7 0.438018
Target:  5'- cGGaAGCGauGGCCAuucaucGCGCCGAGAucUACGCc -3'
miRNA:   3'- -UCgUCGU--CCGGU------CGCGGCUUU--AUGCG- -5'
30757 3' -55.9 NC_006552.1 + 30562 0.7 0.438018
Target:  5'- cGGCcccGCcGGUccaCAGCGCCGGGAUugGUa -3'
miRNA:   3'- -UCGu--CGuCCG---GUCGCGGCUUUAugCG- -5'
30757 3' -55.9 NC_006552.1 + 31891 0.73 0.300793
Target:  5'- aAGCGGCuucGGCCAGCGCg-----GCGCg -3'
miRNA:   3'- -UCGUCGu--CCGGUCGCGgcuuuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 52116 0.74 0.277673
Target:  5'- aGGCAGCAGaGcCCAGCGCUacccagugGCGCg -3'
miRNA:   3'- -UCGUCGUC-C-GGUCGCGGcuuua---UGCG- -5'
30757 3' -55.9 NC_006552.1 + 12965 0.74 0.271431
Target:  5'- uGGCGGUgcguucgAGGCCAGCaGCCGAcAUcACGUa -3'
miRNA:   3'- -UCGUCG-------UCCGGUCG-CGGCUuUA-UGCG- -5'
30757 3' -55.9 NC_006552.1 + 51876 0.86 0.044783
Target:  5'- cAGCGGCAGgaguuggaaGCCAGCaaGCCGAAAUGCGCc -3'
miRNA:   3'- -UCGUCGUC---------CGGUCG--CGGCUUUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 22047 0.83 0.065257
Target:  5'- uGGCGGCcuGGCCAGUGCUGucgcuGAUGCGCg -3'
miRNA:   3'- -UCGUCGu-CCGGUCGCGGCu----UUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 26130 0.79 0.118512
Target:  5'- aGGUGGUAGGCCAGgGCCucgGAGAaGCGCa -3'
miRNA:   3'- -UCGUCGUCCGGUCgCGG---CUUUaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 44456 0.77 0.165019
Target:  5'- gAGCAGCAacugcgcuGCCGGCGCCGGcagACGCc -3'
miRNA:   3'- -UCGUCGUc-------CGGUCGCGGCUuuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 33396 0.76 0.193974
Target:  5'- gGGCGGCGGcGCUuagacuGCGCCGAG--GCGCu -3'
miRNA:   3'- -UCGUCGUC-CGGu-----CGCGGCUUuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 26525 0.75 0.233281
Target:  5'- cAGCAGC-GG-CGGCGCCGggGUguccagcgucagGCGCu -3'
miRNA:   3'- -UCGUCGuCCgGUCGCGGCuuUA------------UGCG- -5'
30757 3' -55.9 NC_006552.1 + 47942 0.74 0.252084
Target:  5'- gAGCuGCAGGCCcGCGCCugcaagguGAAAgcCGCa -3'
miRNA:   3'- -UCGuCGUCCGGuCGCGG--------CUUUauGCG- -5'
30757 3' -55.9 NC_006552.1 + 56263 0.74 0.265302
Target:  5'- uGGCAGCcaAGGCCGGCGuCCGccAGUuCGCc -3'
miRNA:   3'- -UCGUCG--UCCGGUCGC-GGCu-UUAuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.